Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun9g01809 | ATGAGTGGAAGTGGCAAAAAGCGGTCTTCAAAGTGGGATTTGAGAGTTGATCCTGAATTTTCACCTGATGATAGTAAGCAATTACGGCCTGGGTGGTCCTCTGCAGATGTTGCTGGTAGCAATAGTTCGAAGTGGTCCTATTTGGAAGGAAGTGATAAATTAAAGCCTGATATGGGATTTTCATCCAAGGAACCTTTTTCTGGAGGCAGAGGTTCACATAAGGATGATGTTATGAATAAAGACTATGGAGGTTTGGATGCAACAATGGAATGGGATGAGGATGGTTACAGCAAGAAAATTTCCCCTGGATCTGAGGAATGGAAACCTAAGAGACACAGTCAATCTCCTAAAAATGGTTGGAGCAGGAGTCGAAGCAGGAGCCCTCCTCATGGTTTTAGGTGGGATTCAGGAATCAATGACAGAAATAGAATGCGGGCTGGAGGATCAACACAACCATGTAGAGACTTTGCTGCTGGTAAATGCAGAAGAGGTAGCCATTGCCACTTTCTTCATGATAGTCAAAATCATGAGGATAGTTGGGAAAATAAGAGTAGGGAAGATGGAGCTCCTAGATATTCTGTTCCCCAAGAGGGTAGAGACTATTCTCTTAAGAGTGGCAGATCTAATGAAGCTTGTACTAATTTTGCAAAGGGAAGGTGTAGAATGGGAGCATCATGCAAGTTTGTGCATCATGACAATTCTGATGGACATGGTAAAGTTTCTGTGGATGAATTAAATAGAGAGAGGGAAATTGATAGAAGGCACAGAGATAGTTCTTTTGAGCAGGGAGGCGGACATGGACCAAACCGTAGTAGTGATACTCTTTGCAAGTTTTTTGCCAATGGAAATTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATGTAGGAGCCCTAATAGAAGATTAAGAGATGATAGGTGGCCAAGCAATCCTGGGGGAGATCACCATAGGATGGATAGACCAAAATTGAGTGATTCAGATAGTCCTAATAGAAGGCCAAGGGATGATAGGTGGGGTTCAGATGGTAACAAGGCTGATGCAGATAAAATTTGGGACAGTCCAAAGTGGAATGATACAGTTGCTGTCTCTGATTCAGCAAAGCTGGTTGAGGGCAAAAGTGAAAATGTTGGTGCCACAGAGCCAGGATTCACATCGTTACCTACAAGTTATGGATGGAGTCATAGTTTGGATAAGAGCCGAGTGCATGGCGAGCAGCCTTTTTCAAGTGATAAGAAGGAAGTTAACAGTTGGGTATCAGGAAGTACTGCCACCAACATTCATGCTTCCCAGTCAATAGGTACAGACATTTGGTTGGGTGATACAAAAATGTCTCCTGATTGGCATTACAGGGTGGGATCTTCCAACACCATTGAAGAAAAGCATGAGCAAAATAAGCGTGGGATAAAACAAGGTGGTACGTATTTAGCCACCTCTGAACGTGACAGAGTACAAATTGCTGCAGGACAAGGCACTAATCAGAATGCAGAGAGTTTGAATCCTTTGCATTCTTCAGGCTTGCAAGCGGTTGGACAAAGTCAGGTCCCAGTTCCTATTCTACCTTCAAAGGGAGGAATTGTCGATGGTATGCCAAACCAGGAAGTCTCCATTGAGAAAAAATACACTGCTGAACCAAATATCATGGATGCTGGCTTATCACAAGTTAGTTCAAGAAATCCTCCTCCCACTGAGAATCTGGTAGGCCAAGAACAGCTTGCTCAGCTTACCAATCTCTCAGCCTCTCTGGCCCATATCCTTGGGACAGGGCAACAGCTACCGGAACTTTATGCTGCTTTAAATTCTCACTATGCCAAGGACACATCCTCCCTAGCAAAAGCTGAGGTGTCTGCTGTGCCTGTTTCCAATACATTCATCCGCTCTGATCTTGCTGTGCCTGTTTCCAATACATTCATCCACCCTGATCCTGCTGTTGGACTCCCGAAGCAGTACGATCCAATGAGTGATAGTGTTGAGCCAAAGAGTGCTGTTGCAAGTGGGGTATCCTCATCCATTCCTCCTCCAAGTAAAAGAGTTGCAGAAGATGTACTTGAAATTCCATCACAGTTGTCCAACACATCAAGACAAAATCATGGTGATTCTTCCAAGGCTGCTGGTCCAGAAGAACTAGTAAAGAGTGATCCTCTAGTTCAGTTGCAGCCAGGTCAAAACACTGAAGTTGGTAAAGATGATAACAAGGAAATGTTACCCGAGGAAAGACACAAATCTCGAGATGATCCTAAAAGTACCAAAGAGAATGGTCCTTTGGAAAACATGGAGCAAACTGGAGGTCCTGATGAGTCCAAGAAAACAAAGGATTTAAAGGGGATTCGTGCATTTAAATTTGCACTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGATGATTATAAAACAATCGTGAAGAAAGTTGTTGATAAAGTAACTGGTTCCATGCAGGGGGCCAATATTCCTCAGACTCAAGAGAAAATTGACAACTATTTGTCATTTTCAAAACCAAAGCTTAATAAACTTGTACAGGCGTATGTGGAAAAGGTTCAGAAGGCTTAG | 2583 | 0.4301 | MSGSGKKRSSKWDLRVDPEFSPDDSKQLRPGWSSADVAGSNSSKWSYLEGSDKLKPDMGFSSKEPFSGGRGSHKDDVMNKDYGGLDATMEWDEDGYSKKISPGSEEWKPKRHSQSPKNGWSRSRSRSPPHGFRWDSGINDRNRMRAGGSTQPCRDFAAGKCRRGSHCHFLHDSQNHEDSWENKSREDGAPRYSVPQEGRDYSLKSGRSNEACTNFAKGRCRMGASCKFVHHDNSDGHGKVSVDELNREREIDRRHRDSSFEQGGGHGPNRSSDTLCKFFANGNCRNGKYCRFSHDRQACRSPNRRLRDDRWPSNPGGDHHRMDRPKLSDSDSPNRRPRDDRWGSDGNKADADKIWDSPKWNDTVAVSDSAKLVEGKSENVGATEPGFTSLPTSYGWSHSLDKSRVHGEQPFSSDKKEVNSWVSGSTATNIHASQSIGTDIWLGDTKMSPDWHYRVGSSNTIEEKHEQNKRGIKQGGTYLATSERDRVQIAAGQGTNQNAESLNPLHSSGLQAVGQSQVPVPILPSKGGIVDGMPNQEVSIEKKYTAEPNIMDAGLSQVSSRNPPPTENLVGQEQLAQLTNLSASLAHILGTGQQLPELYAALNSHYAKDTSSLAKAEVSAVPVSNTFIRSDLAVPVSNTFIHPDPAVGLPKQYDPMSDSVEPKSAVASGVSSSIPPPSKRVAEDVLEIPSQLSNTSRQNHGDSSKAAGPEELVKSDPLVQLQPGQNTEVGKDDNKEMLPEERHKSRDDPKSTKENGPLENMEQTGGPDESKKTKDLKGIRAFKFALVEFVKELLKPTWKEGQITKDDYKTIVKKVVDKVTGSMQGANIPQTQEKIDNYLSFSKPKLNKLVQAYVEKVQKA | 860 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun9g01809 | 860 | MobiDBLite | consensus disorder prediction | 168 | 193 | - | - | |
Viun9g01809 | 860 | MobiDBLite | consensus disorder prediction | 651 | 679 | - | - | |
Viun9g01809 | 860 | ProSiteProfiles | Zinc finger C3H1-type profile. | 147 | 174 | IPR000571 | GO:0046872 | |
Viun9g01809 | 860 | Pfam | CCCH-type zinc finger | 275 | 295 | IPR041367 | - | |
Viun9g01809 | 860 | Pfam | RNA-binding, Nab2-type zinc finger | 211 | 230 | - | - | |
Viun9g01809 | 860 | MobiDBLite | consensus disorder prediction | 1 | 155 | - | - | |
Viun9g01809 | 860 | MobiDBLite | consensus disorder prediction | 729 | 755 | - | - | |
Viun9g01809 | 860 | MobiDBLite | consensus disorder prediction | 690 | 709 | - | - | |
Viun9g01809 | 860 | MobiDBLite | consensus disorder prediction | 168 | 206 | - | - | |
Viun9g01809 | 860 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 150 | 172 | IPR000571 | GO:0046872 | |
Viun9g01809 | 860 | MobiDBLite | consensus disorder prediction | 231 | 261 | - | - | |
Viun9g01809 | 860 | MobiDBLite | consensus disorder prediction | 34 | 48 | - | - | |
Viun9g01809 | 860 | MobiDBLite | consensus disorder prediction | 91 | 113 | - | - | |
Viun9g01809 | 860 | SUPERFAMILY | CCCH zinc finger | 272 | 295 | IPR036855 | GO:0046872 | |
Viun9g01809 | 860 | SMART | c3hfinal6 | 207 | 232 | IPR000571 | GO:0046872 | |
Viun9g01809 | 860 | SMART | c3hfinal6 | 147 | 173 | IPR000571 | GO:0046872 | |
Viun9g01809 | 860 | SMART | c3hfinal6 | 270 | 296 | IPR000571 | GO:0046872 | |
Viun9g01809 | 860 | ProSiteProfiles | Zinc finger C3H1-type profile. | 270 | 297 | IPR000571 | GO:0046872 | |
Viun9g01809 | 860 | Gene3D | - | 266 | 325 | - | - | |
Viun9g01809 | 860 | MobiDBLite | consensus disorder prediction | 715 | 775 | - | - | |
Viun9g01809 | 860 | ProSiteProfiles | Zinc finger C3H1-type profile. | 206 | 233 | IPR000571 | GO:0046872 | |
Viun9g01809 | 860 | MobiDBLite | consensus disorder prediction | 8 | 24 | - | - | |
Viun9g01809 | 860 | MobiDBLite | consensus disorder prediction | 301 | 356 | - | - | |
Viun9g01809 | 860 | Gene3D | - | 143 | 247 | - | - | |
Viun9g01809 | 860 | PANTHER | PROTEIN FRIGIDA-ESSENTIAL 1 | 1 | 859 | - | - | |
Viun9g01809 | 860 | MobiDBLite | consensus disorder prediction | 231 | 272 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun9g01809 | Viun-Chr9 | 27657490 | 27666491 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Viun9g01809 | zf-CCCH | 3.9e-05 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun9g01809 | - | K22909 | gmx:100783856 | 1384.78 |