Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01809 ATGAGTGGAAGTGGCAAAAAGCGGTCTTCAAAGTGGGATTTGAGAGTTGATCCTGAATTTTCACCTGATGATAGTAAGCAATTACGGCCTGGGTGGTCCTCTGCAGATGTTGCTGGTAGCAATAGTTCGAAGTGGTCCTATTTGGAAGGAAGTGATAAATTAAAGCCTGATATGGGATTTTCATCCAAGGAACCTTTTTCTGGAGGCAGAGGTTCACATAAGGATGATGTTATGAATAAAGACTATGGAGGTTTGGATGCAACAATGGAATGGGATGAGGATGGTTACAGCAAGAAAATTTCCCCTGGATCTGAGGAATGGAAACCTAAGAGACACAGTCAATCTCCTAAAAATGGTTGGAGCAGGAGTCGAAGCAGGAGCCCTCCTCATGGTTTTAGGTGGGATTCAGGAATCAATGACAGAAATAGAATGCGGGCTGGAGGATCAACACAACCATGTAGAGACTTTGCTGCTGGTAAATGCAGAAGAGGTAGCCATTGCCACTTTCTTCATGATAGTCAAAATCATGAGGATAGTTGGGAAAATAAGAGTAGGGAAGATGGAGCTCCTAGATATTCTGTTCCCCAAGAGGGTAGAGACTATTCTCTTAAGAGTGGCAGATCTAATGAAGCTTGTACTAATTTTGCAAAGGGAAGGTGTAGAATGGGAGCATCATGCAAGTTTGTGCATCATGACAATTCTGATGGACATGGTAAAGTTTCTGTGGATGAATTAAATAGAGAGAGGGAAATTGATAGAAGGCACAGAGATAGTTCTTTTGAGCAGGGAGGCGGACATGGACCAAACCGTAGTAGTGATACTCTTTGCAAGTTTTTTGCCAATGGAAATTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATGTAGGAGCCCTAATAGAAGATTAAGAGATGATAGGTGGCCAAGCAATCCTGGGGGAGATCACCATAGGATGGATAGACCAAAATTGAGTGATTCAGATAGTCCTAATAGAAGGCCAAGGGATGATAGGTGGGGTTCAGATGGTAACAAGGCTGATGCAGATAAAATTTGGGACAGTCCAAAGTGGAATGATACAGTTGCTGTCTCTGATTCAGCAAAGCTGGTTGAGGGCAAAAGTGAAAATGTTGGTGCCACAGAGCCAGGATTCACATCGTTACCTACAAGTTATGGATGGAGTCATAGTTTGGATAAGAGCCGAGTGCATGGCGAGCAGCCTTTTTCAAGTGATAAGAAGGAAGTTAACAGTTGGGTATCAGGAAGTACTGCCACCAACATTCATGCTTCCCAGTCAATAGGTACAGACATTTGGTTGGGTGATACAAAAATGTCTCCTGATTGGCATTACAGGGTGGGATCTTCCAACACCATTGAAGAAAAGCATGAGCAAAATAAGCGTGGGATAAAACAAGGTGGTACGTATTTAGCCACCTCTGAACGTGACAGAGTACAAATTGCTGCAGGACAAGGCACTAATCAGAATGCAGAGAGTTTGAATCCTTTGCATTCTTCAGGCTTGCAAGCGGTTGGACAAAGTCAGGTCCCAGTTCCTATTCTACCTTCAAAGGGAGGAATTGTCGATGGTATGCCAAACCAGGAAGTCTCCATTGAGAAAAAATACACTGCTGAACCAAATATCATGGATGCTGGCTTATCACAAGTTAGTTCAAGAAATCCTCCTCCCACTGAGAATCTGGTAGGCCAAGAACAGCTTGCTCAGCTTACCAATCTCTCAGCCTCTCTGGCCCATATCCTTGGGACAGGGCAACAGCTACCGGAACTTTATGCTGCTTTAAATTCTCACTATGCCAAGGACACATCCTCCCTAGCAAAAGCTGAGGTGTCTGCTGTGCCTGTTTCCAATACATTCATCCGCTCTGATCTTGCTGTGCCTGTTTCCAATACATTCATCCACCCTGATCCTGCTGTTGGACTCCCGAAGCAGTACGATCCAATGAGTGATAGTGTTGAGCCAAAGAGTGCTGTTGCAAGTGGGGTATCCTCATCCATTCCTCCTCCAAGTAAAAGAGTTGCAGAAGATGTACTTGAAATTCCATCACAGTTGTCCAACACATCAAGACAAAATCATGGTGATTCTTCCAAGGCTGCTGGTCCAGAAGAACTAGTAAAGAGTGATCCTCTAGTTCAGTTGCAGCCAGGTCAAAACACTGAAGTTGGTAAAGATGATAACAAGGAAATGTTACCCGAGGAAAGACACAAATCTCGAGATGATCCTAAAAGTACCAAAGAGAATGGTCCTTTGGAAAACATGGAGCAAACTGGAGGTCCTGATGAGTCCAAGAAAACAAAGGATTTAAAGGGGATTCGTGCATTTAAATTTGCACTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGATGATTATAAAACAATCGTGAAGAAAGTTGTTGATAAAGTAACTGGTTCCATGCAGGGGGCCAATATTCCTCAGACTCAAGAGAAAATTGACAACTATTTGTCATTTTCAAAACCAAAGCTTAATAAACTTGTACAGGCGTATGTGGAAAAGGTTCAGAAGGCTTAG 2583 0.4301 MSGSGKKRSSKWDLRVDPEFSPDDSKQLRPGWSSADVAGSNSSKWSYLEGSDKLKPDMGFSSKEPFSGGRGSHKDDVMNKDYGGLDATMEWDEDGYSKKISPGSEEWKPKRHSQSPKNGWSRSRSRSPPHGFRWDSGINDRNRMRAGGSTQPCRDFAAGKCRRGSHCHFLHDSQNHEDSWENKSREDGAPRYSVPQEGRDYSLKSGRSNEACTNFAKGRCRMGASCKFVHHDNSDGHGKVSVDELNREREIDRRHRDSSFEQGGGHGPNRSSDTLCKFFANGNCRNGKYCRFSHDRQACRSPNRRLRDDRWPSNPGGDHHRMDRPKLSDSDSPNRRPRDDRWGSDGNKADADKIWDSPKWNDTVAVSDSAKLVEGKSENVGATEPGFTSLPTSYGWSHSLDKSRVHGEQPFSSDKKEVNSWVSGSTATNIHASQSIGTDIWLGDTKMSPDWHYRVGSSNTIEEKHEQNKRGIKQGGTYLATSERDRVQIAAGQGTNQNAESLNPLHSSGLQAVGQSQVPVPILPSKGGIVDGMPNQEVSIEKKYTAEPNIMDAGLSQVSSRNPPPTENLVGQEQLAQLTNLSASLAHILGTGQQLPELYAALNSHYAKDTSSLAKAEVSAVPVSNTFIRSDLAVPVSNTFIHPDPAVGLPKQYDPMSDSVEPKSAVASGVSSSIPPPSKRVAEDVLEIPSQLSNTSRQNHGDSSKAAGPEELVKSDPLVQLQPGQNTEVGKDDNKEMLPEERHKSRDDPKSTKENGPLENMEQTGGPDESKKTKDLKGIRAFKFALVEFVKELLKPTWKEGQITKDDYKTIVKKVVDKVTGSMQGANIPQTQEKIDNYLSFSKPKLNKLVQAYVEKVQKA 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01809 860 MobiDBLite consensus disorder prediction 168 193 - -
Viun9g01809 860 MobiDBLite consensus disorder prediction 651 679 - -
Viun9g01809 860 ProSiteProfiles Zinc finger C3H1-type profile. 147 174 IPR000571 GO:0046872
Viun9g01809 860 Pfam CCCH-type zinc finger 275 295 IPR041367 -
Viun9g01809 860 Pfam RNA-binding, Nab2-type zinc finger 211 230 - -
Viun9g01809 860 MobiDBLite consensus disorder prediction 1 155 - -
Viun9g01809 860 MobiDBLite consensus disorder prediction 729 755 - -
Viun9g01809 860 MobiDBLite consensus disorder prediction 690 709 - -
Viun9g01809 860 MobiDBLite consensus disorder prediction 168 206 - -
Viun9g01809 860 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 150 172 IPR000571 GO:0046872
Viun9g01809 860 MobiDBLite consensus disorder prediction 231 261 - -
Viun9g01809 860 MobiDBLite consensus disorder prediction 34 48 - -
Viun9g01809 860 MobiDBLite consensus disorder prediction 91 113 - -
Viun9g01809 860 SUPERFAMILY CCCH zinc finger 272 295 IPR036855 GO:0046872
Viun9g01809 860 SMART c3hfinal6 207 232 IPR000571 GO:0046872
Viun9g01809 860 SMART c3hfinal6 147 173 IPR000571 GO:0046872
Viun9g01809 860 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Viun9g01809 860 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Viun9g01809 860 Gene3D - 266 325 - -
Viun9g01809 860 MobiDBLite consensus disorder prediction 715 775 - -
Viun9g01809 860 ProSiteProfiles Zinc finger C3H1-type profile. 206 233 IPR000571 GO:0046872
Viun9g01809 860 MobiDBLite consensus disorder prediction 8 24 - -
Viun9g01809 860 MobiDBLite consensus disorder prediction 301 356 - -
Viun9g01809 860 Gene3D - 143 247 - -
Viun9g01809 860 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 859 - -
Viun9g01809 860 MobiDBLite consensus disorder prediction 231 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01809 Viun-Chr9 27657490 27666491 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun9g01809 zf-CCCH 3.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01809 - K22909 gmx:100783856 1384.78