Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01808 ATGGATACCAACCTCAACACTACATTCACAAACGTTAACACCACTTACAATCACGAGACCATGACCACAGATCAAAACAACATCATCCTCCACGATCATCATCATCATCATCATCATCATCAACAAATTCCAATGGGTGTTGGAATTTGGTCCAATCACCACCACCACCACCACCACCCTTTTCACACACAACCCTCTTCCTCCTCTTCAACTAATTTCCTAACCGACGTCTTGGGAATCCAGTTTGAAGAAGATGAAGAGGAAGAGCTCGGAGCCATGAAGGAGATGATGTACCAGATGGCGGCGATGCAACCGGTCGACATAGACCCCGCCACCGTCAGAAAACCAAAGCGGCGAAACGTCCGCATCAGTGATGACCCTCAGAGTGTCGCTGCACGCCACAGAAGAGAGAAGATCAGTGAGAAAATCCGCATCCTTCAACGACTTGTCCCTGGTGGAACCAAAATGGACACTGCTTCCATGCTTGACGAAGCCATTCGCTATGTCAAGTTCTTGAAGCGACAAATCAGGTTCCTTCAATCAACACCACAGGTTGATTGCGTTAATGCCACTGCTTCTGCCTCCGATTGCCATTTTGCACCACCTACATTGCACGCTTCCGCCTCCGTCAACGTGCCTCTTGGAATCGAATTCAACGCCGGAATTCATGACCATGCCGCTCATTCCCTTCACCTTCAACATTCATCAGGGGACAATGAAAATGAGGAAAGGATTCCAGTGTAA 744 0.4825 MDTNLNTTFTNVNTTYNHETMTTDQNNIILHDHHHHHHHHQQIPMGVGIWSNHHHHHHHPFHTQPSSSSSTNFLTDVLGIQFEEDEEEELGAMKEMMYQMAAMQPVDIDPATVRKPKRRNVRISDDPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRFLQSTPQVDCVNATASASDCHFAPPTLHASASVNVPLGIEFNAGIHDHAAHSLHLQHSSGDNENEERIPV 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01808 247 Pfam Helix-loop-helix DNA-binding domain 133 172 IPR011598 GO:0046983
Viun9g01808 247 CDD bHLH_AtIND_like 124 181 - -
Viun9g01808 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Viun9g01808 247 FunFam BHLH transcription factor 126 190 - -
Viun9g01808 247 Gene3D - 126 188 IPR036638 GO:0046983
Viun9g01808 247 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 207 IPR045843 GO:0003700|GO:0006355
Viun9g01808 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 182 IPR036638 GO:0046983
Viun9g01808 247 MobiDBLite consensus disorder prediction 50 70 - -
Viun9g01808 247 SMART finulus 129 178 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01808 Viun-Chr9 27619484 27620473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01808 92 199 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 71.296 1.29e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun9g01808 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01808 - - var:108331264 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01808 9 27619484 27620473 Viun9g01808 9 27619484 27620473 ECH