Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01793 ATGGCCCGAAGAAATTCGACTCCAGGGTTTCGGTTCCGTCCCACCGACGTTGAGTTGATTGAGTTTTTTCTGAAGAGGAAGGTTCGGGGCAAGAAAATTCCTAGCGGAATAATCGCTGAGCTTGACTTGTACAAGTATGCTCCGTGGGATCTTCCAGATAAATCTGCGCTTCAGAGTGGGGATTTGCAGTGGTACTTCTTTTGCCCGCAGGGGAAGAAGTATTTGAGTGGAGGGAGGATGAATCGGTCGACGGAGGCTGGGTACTGGAAGACTACTGGGAAGGATAGAGCGGTTGAACACAAGAATCGAGTTGTGGGGATGATTAAAACTCTGGTTTTTCACACAGGTAGAGCCCCTAAGGGAAATCGAACTGATTGGGTTATGCATGAATTCAGGCTCGATGACAAGGAGATGGTTGACGAAGGCATTTCGCAGCTAATCTACAAGGATACAGTGCCTTCTATGGAATTCAAACTCAATCATGAGAAACAATTTTCTCAAGCTCCCAAAATCATAAAGGACTCCTATGTAATTTGTAGGATATTCCAAAAAGAAGGTCCTGGTCCTAGGAATGGTGCACAATATGGTAAACCATATGATGAGAAAGAGTGGGATACAGATGAGGAAATTGACTCTGTGGAATCTGACCGTGTTGCTTCTGTGTCTACACCTGTTCCCATACAATCCAGTGAAATTCATATTTCTATTGCAAAAGACATCCATCCCTCTACAAGTGGATGTGCTGGATTGACCTCTGTATCATGTGTATCAGAATTGATGCCTTCTTGCACAGAACATCATGCGATTCCTAACAACAATCAAGTTGTCTCTGTATCATGTGTATCAGAATTGATGCCCTCTTGCTCAGCAATACCTTCTTCTCCTAACGATGCGTTGGGTTCTGTATCACATCTATCAAAATTGGCACCCTCTTGTTCAGCAGTTCCTTTTGCTCCAAACGATGATGTTGACTCTGTATCATGTGTATCAAAATTGATGCCCTCTAGCTCAGCAGTTTCTTTTGGTTCAAACAATGAAGTTGACTCTATATCGTGTGTTTCAAAATTGATGCTCTCTTGCTTGCCACTTGCTTTGGCTCCAAACAATGTAGTTGAGGCATCATCATCTGTACCAGAATTGATGCCCTCTTGCACGACACTTCCTTCAGCTTCATGTCCAAACCATCAAGATGATGATAACGTTTTATCTTCGCTAGATTATTTGAAAGAAGATGATGGCACAATGGCTGTGAATGCAAACAATGGAATTGAGAAGGTTGATCCTGATCAGGCGAGCAATGCTGAATGCGCACCATGTTTGGATCTAAATGTGATTTTTGAGAACTTAGGAGACCTTGACAGCTGGGTTGGATTGGGTGAAGGAAGTTTATCCTCTGGCCAGAAAAATGGACTTTCTACAAGCGATATGTTTTATACAGGTGTTGATGATATCTTCAGGTCTTGGGAATCCCAGGACTTTTTGGAGTTGATGGACCTAGCGGGGCCACAGCCCTGGCAGAATAAGCATGGAAGTTCTGGCGAAGATAACAAGTGA 1554 0.435 MARRNSTPGFRFRPTDVELIEFFLKRKVRGKKIPSGIIAELDLYKYAPWDLPDKSALQSGDLQWYFFCPQGKKYLSGGRMNRSTEAGYWKTTGKDRAVEHKNRVVGMIKTLVFHTGRAPKGNRTDWVMHEFRLDDKEMVDEGISQLIYKDTVPSMEFKLNHEKQFSQAPKIIKDSYVICRIFQKEGPGPRNGAQYGKPYDEKEWDTDEEIDSVESDRVASVSTPVPIQSSEIHISIAKDIHPSTSGCAGLTSVSCVSELMPSCTEHHAIPNNNQVVSVSCVSELMPSCSAIPSSPNDALGSVSHLSKLAPSCSAVPFAPNDDVDSVSCVSKLMPSSSAVSFGSNNEVDSISCVSKLMLSCLPLALAPNNVVEASSSVPELMPSCTTLPSASCPNHQDDDNVLSSLDYLKEDDGTMAVNANNGIEKVDPDQASNAECAPCLDLNVIFENLGDLDSWVGLGEGSLSSGQKNGLSTSDMFYTGVDDIFRSWESQDFLELMDLAGPQPWQNKHGSSGEDNK 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01793 517 Gene3D NAC domain 15 186 IPR036093 GO:0003677|GO:0006355
Viun9g01793 517 ProSiteProfiles NAC domain profile. 6 184 IPR003441 GO:0003677|GO:0006355
Viun9g01793 517 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 265 - -
Viun9g01793 517 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Viun9g01793 517 SUPERFAMILY NAC domain 5 184 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01793 Viun-Chr9 27465669 27470240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01793 1 502 NAC Transcription Factor Family AT5G09330 34.241 2.32e-77 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun9g01793 NAM 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01793 - - vun:114164401 1053.89