Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01792 ATGGCCCGAAGAAATTCGACTCCAGGGTTTCGGTTCCGTCCCACCGACGTTGAGTTGATTGAGTTTTTTCTGAAGAGGAAGGTTCGGGGCAAGAAAATTCCTAGCGGAATAATCGCTGAGCTTGACTTGTACAAGTATGCTCCGTGGGATCTTCCAGATAAATCTGCGCTTCAGAGTGGGGATTTGCAGTGGTACTTCTTTTGCCCGCAGGGGAAGAAGTATTTGAGTGGAGGGAGGATGAATCGGTCGACGGAGGCTGGGTACTGGAAGACTACTGGGAAGGATAGAGCGGTTGAACACAAGAATCGAGTTGTGGGGATGATTAAAACTCTGGTTTTTCACACAGGTAGAGCCCCTAAGGGAAATCGAACTGATTGGGTTATGCATGAATTCAGGCTCGATGACAAGGAGATGGTTGACGAAGGCATTTCGCAGGACTCCTATGTAATTTGTAGGATATTCCAAAAAGAAGGTCCTGGTCCTAGGAATGGTGCACAATATGGTAAACCATATGATGAGAAAGAGTGGGATACAGATGAGGAAATTGACTCTGTGGAATCTGACCGTGTTGCTTCTGTGTCTACACCTGTTCCCATACAATCCAGTGAAATTCATATTTCTATTGCAAAAGACATCCATCCCTCTACAAGTGGATGTGCTGGATTGACCTCTGTATCATGTGTATCAGAATTGATGCCTTCTTGCACAGAACATCATGCGATTCCTAACAACAATCAAGTTGTCTCTGTATCATGTGTATCAGAATTGATGCCCTCTTGCTCAGCAATACCTTCTTCTCCTAACGATGCGTTGGGTTCTGTATCACATCTATCAAAATTGGCACCCTCTTGTTCAGCAGTTCCTTTTGCTCCAAACGATGATGTTGACTCTGTATCATGTGTATCAAAATTGATGCCCTCTAGCTCAGCAGTTTCTTTTGGTTCAAACAATGAAGTTGACTCTATATCGTGTGTTTCAAAATTGATGCTCTCTTGCTTGCCACTTGCTTTGGCTCCAAACAATGTAGTTGAGGCATCATCATCTGTACCAGAATTGATGCCCTCTTGCACGACACTTCCTTCAGCTTCATGTCCAAACCATCAAGATGATGATAACGTTTTATCTTCGCTAGATTATTTGAAAGAAGATGATGGCACAATGGCTGTGAATGCAAACAATGGAATTGAGAAGGTTGATCCTGATCAGGCGAGCAATGCTGAATGCGCACCATGTTTGGATCTAAATGTGATTTTTGAGAACTTAGGAGACCTTGACAGCTGGGTTGGATTGGGTGAAGGAAGTTTATCCTCTGGCCAGAAAAATGGACTTTCTACAAGCGATATGTTTTATACAGGTGTTGATGATATCTTCAGGTCTTGGGAATCCCAGGACTTTTTGGAGTTGATGGACCTAGCGGGGCCACAGCCCTGGCAGAATAAGCATGGAAGTTCTGGCGAAGATAACAAGTGA 1470 0.4401 MARRNSTPGFRFRPTDVELIEFFLKRKVRGKKIPSGIIAELDLYKYAPWDLPDKSALQSGDLQWYFFCPQGKKYLSGGRMNRSTEAGYWKTTGKDRAVEHKNRVVGMIKTLVFHTGRAPKGNRTDWVMHEFRLDDKEMVDEGISQDSYVICRIFQKEGPGPRNGAQYGKPYDEKEWDTDEEIDSVESDRVASVSTPVPIQSSEIHISIAKDIHPSTSGCAGLTSVSCVSELMPSCTEHHAIPNNNQVVSVSCVSELMPSCSAIPSSPNDALGSVSHLSKLAPSCSAVPFAPNDDVDSVSCVSKLMPSSSAVSFGSNNEVDSISCVSKLMLSCLPLALAPNNVVEASSSVPELMPSCTTLPSASCPNHQDDDNVLSSLDYLKEDDGTMAVNANNGIEKVDPDQASNAECAPCLDLNVIFENLGDLDSWVGLGEGSLSSGQKNGLSTSDMFYTGVDDIFRSWESQDFLELMDLAGPQPWQNKHGSSGEDNK 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01792 489 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 238 - -
Viun9g01792 489 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Viun9g01792 489 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Viun9g01792 489 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Viun9g01792 489 FunFam Nac domain-containing protein 86 15 159 - -
Viun9g01792 489 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01792 Viun-Chr9 27465669 27470240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01792 1 474 NAC Transcription Factor Family AT5G09330 36.214 1.85e-83 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun9g01792 NAM 1.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01792 - - vun:114164401 983.4