Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01749 ATGGCCGCACTCATTCTCGCCGAAGTAGCCCCAGAAACTCTGGCAGCACCTGTATCAACTGCCACTACCGTCGTTCTCCCGTCTGAATCGCCATGGCTGCACCATCGTCGCACCACGTCGAGCGCGTCAGAAAAGTCTGCGCCTACACTCACCCGCAACAGTTTTGCGGGCCCGGCCCCTCCGGCGTTTCCGCCGCTGTTAAGACTTTGGCAAAAATTCAATGACCCAAGTCCAATGGATTCAGGAGCAATAACTTATGTTCAAAAAGCATGGACGAAGTACTTTCTAGCCGTAATTGATACTCTGTCTGGATTAGAACTTTCTCTGAATTGGAATTTTGTTTTTGGATTGGTTATTTTGTTTTCCTTTTTCTGTTTTTCTTGCTCCAACCAAACCAACCAAACCCATGGACCATGTGAATTGACCAACCCTACATGGGTGAAGTCAGTTGACAAACATTTGTTACTGCAATCATATTTAGGATCCTCAAGAGCTAATGTGATTGTAGCCAAAGATGGTTCCGGAAACTTCAGAAATGTTAAAGCAGCTATTGACTCTATTCCAAAGAGTAATAATAAAAGGTATGTGATATATATTAAAGGTGGAGTCTACGATGAAAGAGTTGAGGTAAAATCAACTAATGTAATGCTTGTGGGAGATGGTATTGGAAAAACCATAATCACAGGCAACCGAAGTGTTGGAGGAGGCTTCCAAACCCATGATACAACGACTTTTGTTGCTACGGGTAATGGATTTATTGCTAAAGGCATCACATTTAGGAATACTGCAGGAGCAGCAAGTCATCAAGCAGTAGCAATGCTTTTCACCTCAGATAGGTCAGTATTTTACAAATGTGATTTTGAGGGTTATCAATACACTTTATGTCTTCAAGCGGGAAAGCAATTTTACAAAGAATGTGACATCTACGGCACAGTGGACTTTATCTTTGGAAATGATGCTGCTGCAGTATTGCAAAATTGCACAATTTATGCAAGAAATGCAATAAACACCTCTACCATAGTAATCACTGCTCAAGGTAGAACTAATCCTGAGGCATCCAGTGGAATCATCATCCACAACTCCAAGGTCATTGGTGCCCCAGGCTTCAACCCTAGTTCTGTGAAAGCATACCTTGGCAGACCTTGGAAAAATTACTCAAGAACAGTGTTCATGAAGACCTCACTTGACAGTTTCATCAACCCTGCTGGTTGGATGGAATGGGAAGGTTCACCTAAGTTTGATGACACTTTATTCTATGCAGAATATGCAAACAGTGGTCCTGGCTCCAACACTGTCCACAGGGTCAACTGGAAGGGTTACCATGTTTTCACTCATGAATCTCAGGCTAAACCTTTTACTGTTAAAAACTTTATTGATGGTAACTCTTGGATACATAATACTGGTGTTCCTTTCGATTCAGGACTTTAA 1428 0.423 MAALILAEVAPETLAAPVSTATTVVLPSESPWLHHRRTTSSASEKSAPTLTRNSFAGPAPPAFPPLLRLWQKFNDPSPMDSGAITYVQKAWTKYFLAVIDTLSGLELSLNWNFVFGLVILFSFFCFSCSNQTNQTHGPCELTNPTWVKSVDKHLLLQSYLGSSRANVIVAKDGSGNFRNVKAAIDSIPKSNNKRYVIYIKGGVYDERVEVKSTNVMLVGDGIGKTIITGNRSVGGGFQTHDTTTFVATGNGFIAKGITFRNTAGAASHQAVAMLFTSDRSVFYKCDFEGYQYTLCLQAGKQFYKECDIYGTVDFIFGNDAAAVLQNCTIYARNAINTSTIVITAQGRTNPEASSGIIIHNSKVIGAPGFNPSSVKAYLGRPWKNYSRTVFMKTSLDSFINPAGWMEWEGSPKFDDTLFYAEYANSGPGSNTVHRVNWKGYHVFTHESQAKPFTVKNFIDGNSWIHNTGVPFDSGL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01749 475 SUPERFAMILY Pectin lyase-like 163 474 IPR011050 -
Viun9g01749 475 Pfam Pectinesterase 166 461 IPR000070 GO:0030599|GO:0042545
Viun9g01749 475 ProSitePatterns Pectinesterase signature 1. 191 210 IPR018040 -
Viun9g01749 475 FunFam Pectinesterase 161 475 - -
Viun9g01749 475 Gene3D - 161 475 IPR012334 -
Viun9g01749 475 PANTHER PECTINESTERASE 102 465 - -
Viun9g01749 475 ProSitePatterns Pectinesterase signature 2. 308 317 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01749 Viun-Chr9 26574161 26584652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01749 144 475 Carbohydrate Esterase AT2G45220 57.485 4.24e-127 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01749 K01051 - gmx:100782892 455.292