Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01689 ATGGAAGATGAAAGCCACACCAATTCGTCAAATGGGTTCATCACAGCAAGCCCCGAAAGCCCGTCCTTAAAATCATGCAATAATAGCAACAGCACCAATAGCAGCAACAGTAACAACAACAAAGAACAAGATCGCTTTCTTCCTATAGCCAATGTGGGAAGAATCATGAAAAAGGCCATCCCTGGCAATGGAAAAATCTCCAAGGATGCAAAAGAAACAGTTCAAGAGTGTGTGTCTGAGTTCATCAGCTTCGTCACAGGCGAAGCCTCAGACAAATGCCAAAGGGAAAAGAGAAAGACTATCAATGGAGAAGACATCATTTGGGCCATCACAACCCTAGGATTTGAGGACTATGTCGAGCCCTTAAAATCCTATCTCCAAAAATATAAAGAGATTGAAGGAGAGAAGCTCAACATTCCCAAGCAACAACGTCCTGAACAAAAGCTACATCCTCAGCACCAAGACCAAAATAACAATCTACCTTTAAGTAGTAGTGTATATTCCTCTCCCACTCTCATTTCTCAGTCATCTTATGTACCCACGGATCAACTATTTTCCCTACCATTCTCCCCAAATTCGATTCAGAAACAGTTACAACAGCAAGACCAAATCGATTCTGTTGGACAATGGTAA 633 0.4186 MEDESHTNSSNGFITASPESPSLKSCNNSNSTNSSNSNNNKEQDRFLPIANVGRIMKKAIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGEDIIWAITTLGFEDYVEPLKSYLQKYKEIEGEKLNIPKQQRPEQKLHPQHQDQNNNLPLSSSVYSSPTLISQSSYVPTDQLFSLPFSPNSIQKQLQQQDQIDSVGQW 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01689 210 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 24 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Viun9g01689 210 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 46 110 IPR003958 -
Viun9g01689 210 FunFam Nuclear transcription factor Y subunit B-3 35 159 - -
Viun9g01689 210 Gene3D Histone, subunit A 33 163 IPR009072 GO:0046982
Viun9g01689 210 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Viun9g01689 210 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Viun9g01689 210 PRINTS CCAAT-binding transcription factor subunit A signature 112 130 - -
Viun9g01689 210 SUPERFAMILY Histone-fold 43 151 IPR009072 GO:0046982
Viun9g01689 210 MobiDBLite consensus disorder prediction 142 164 - -
Viun9g01689 210 MobiDBLite consensus disorder prediction 7 45 - -
Viun9g01689 210 MobiDBLite consensus disorder prediction 1 46 - -
Viun9g01689 210 ProSitePatterns NF-YB/HAP3 subunit signature. 77 93 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01689 Viun-Chr9 25460686 25461318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01689 8 210 CCAAT-HAP3 Transcription Factor Family AT2G13570 59.174 2.59e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Viun9g01689 CBFD_NFYB_HMF 3.1e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01689 K08065 - gmx:100778216 281.952