Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01675 ATGAACGAAGCCCAAATTGAAATTACCATTCCTCACCTGTTCAGATGCCCCATCAGTTTGGACTTGTTCGAAGATCCAGTAACTTTGTCCACAGGCCAAACCTATGACAGATCAAGCATAGAGAAATGGTTCTCTGCTGGAAATCTCACATGCCCTGTAACAATGCAGAAGCTTCGTGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTCCAATTGGGTCCCCAGTTTGGTAACTCTGCTACTATTGATTATCTAGCCGCACTCAAGCACACCCTTGAATCTCCCCAATTGGAAAACAAGCTCCAAGCACTTGAAAAAATCACAGTTCTCTCTGATGAGTATTGCTCCTTCAGAAAATCTTGTTTCCATCAACTCAGTTTCTTGCCCCTACTTCTGGAACTTGTTTTTGGCACCGAGTTCGCAAACTGTCACATGAAGTTCACGGAGCTAGCACTTTCCTGCATTATAAAGTTGTTACCTTTTGTGAGTTTGGAGCCTCTAAATATGATCAAAGATGAGTCTAAGTCGAGAACGTTCCTTCTACTATTTGAAAAGGGAACAAGCTCGGTTAAGACCAGTCTTTGTCATCTTATAGATTCAACAGCATCACCACAAACAGAAGAGGTGTGTCAGATGCTCGGACACTCTCAAAAACTAGTGCGTGAAATTGTGGTACTTGTTCGTCAAGGTTGTGAGGTTTCTAAGGTTGCTATTAAGGCCATGTTAGCATTATGTTACTTGCAATCTAACCGGGACAATTTGGTGAGGGCAGGAGCAATCGATGGGGTCATAATATACATTTCAGGTTGTGATTCAAGGCAGAAGAACTTGGCTCCATTTGCGATGGCAATAATAAAGAACCTTCTGGTGCTAGAGAGTGCTAAAGAGGCACTGGTGAATCACCCTTGTGGGGTTGCAACTTTGGTGAAGATGGTTTTCAGGGTGTGTAATCAAGAGTGTAGTGAGAGTGCTGTTGGGATACTTGCAATCGTTTGCCGAGATTTTGGGCGTGCAAGAGATGAAGCAATCGGTGCTGGAGTTTTGACTCAGTTGCTGTTTCTTCTCCAGAGTCAGTGTGGCCCCAAAACTAAAACAAAAGCAAGAATGCTGCTCAAGTTGCTAAGATCAAAGTGGATTGAGGAACCAAAACAGGTGTAG 1179 0.4377 MNEAQIEITIPHLFRCPISLDLFEDPVTLSTGQTYDRSSIEKWFSAGNLTCPVTMQKLRDPSIVPNHTLRHLIDQWLQLGPQFGNSATIDYLAALKHTLESPQLENKLQALEKITVLSDEYCSFRKSCFHQLSFLPLLLELVFGTEFANCHMKFTELALSCIIKLLPFVSLEPLNMIKDESKSRTFLLLFEKGTSSVKTSLCHLIDSTASPQTEEVCQMLGHSQKLVREIVVLVRQGCEVSKVAIKAMLALCYLQSNRDNLVRAGAIDGVIIYISGCDSRQKNLAPFAMAIIKNLLVLESAKEALVNHPCGVATLVKMVFRVCNQECSESAVGILAIVCRDFGRARDEAIGAGVLTQLLFLLQSQCGPKTKTKARMLLKLLRSKWIEEPKQV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01675 392 CDD RING-Ubox_PUB 11 60 IPR045210 -
Viun9g01675 392 Gene3D - 186 390 IPR011989 -
Viun9g01675 392 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Viun9g01675 392 FunFam RING-type E3 ubiquitin transferase 10 81 - -
Viun9g01675 392 PANTHER WDSAM1 PROTEIN 7 389 IPR045185 GO:0061630
Viun9g01675 392 SUPERFAMILY ARM repeat 228 381 IPR016024 -
Viun9g01675 392 SUPERFAMILY RING/U-box 6 78 - -
Viun9g01675 392 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Viun9g01675 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Viun9g01675 392 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01675 Viun-Chr9 25267462 25269320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01675 8 385 U-box Gene Family AT3G19380 32.843 1.24e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01675 - - gmx:100815247 678.707