Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01650 ATGGGTAGATCTCCTTGTTGTGAGAAGGAACACACAAACAAAGGAGCTTGGACCAAAGAGGAAGACGAACGCCTCATCAACTACATCAAACTCCATGGCGAAGGATGTTGGAGATCCCTTCCCAAAGCTGCTGGCTTGCTCAGATGTGGCAAGAGTTGCAGACTCAGATGGATAAATTACCTCAGACCTGATCTAAAGAGAGGCAACTTCACTGAAGACGAAGACGAACTCATCATTAACCTCCACAGCTTACTTGGAAACAAGTGGTCTCTGATTGCCGCGAGGTTACCGGGAAGAACCGATAACGAAATCAAAAACTATTGGAACACTCACATCAAGCGGAAACTCTACAGCCGCGGAATCGACCCGCAAACCCATCGCCCACTCAACGCCGCCTCCGCCACTTCGGCAACCGCCGCGGTTTCGCCTCCCTCCCCCGCCGCTGTCCCTGTGGCAACGTCATCATCCAGCAAAAAGATAAACAGCGACAGCATTAGCAGCTCCAACACCCTCGCCCATGATGTTGTTATTACCAACAACAACAACATCAACAATAACAACAGCAACGGTTTTCAGTTGGTGGGCAATAGTGGCTATGCCAACGCCACAACGAAGGTTGGAACCGACGAAGATTCTAACAGCAGCAGCGGCGTTACCGTGGAAGAATCCCTCCCTCACCATCAACTGAACCTGGATCTTTCCATTGGCCTTCCCTCTCCTCAGCAGGTTTCTTCTTCGGTGAACCCAGAAAAGTTGAAAGCGCAAGAGCATGATCAAAAACCTCATGTGTTGTACAAGTGGTATGGGAACATTACTGGGCAAGGTGTTTGTCTTTGTTACAGTCTAGGGCTTCAAAGCGACCAAGCTTGTTATTGCAAAGGCATGGGTGCTACTGCTACTGCTACCACGGTTACTACAACCTCCACAGATAGTAATCTATATAGATTTTACAGACCCATGAATATTTAG 969 0.4861 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEDEDELIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNAASATSATAAVSPPSPAAVPVATSSSSKKINSDSISSSNTLAHDVVITNNNNINNNNSNGFQLVGNSGYANATTKVGTDEDSNSSSGVTVEESLPHHQLNLDLSIGLPSPQQVSSSVNPEKLKAQEHDQKPHVLYKWYGNITGQGVCLCYSLGLQSDQACYCKGMGATATATTVTTTSTDSNLYRFYRPMNI 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01650 322 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun9g01650 322 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 231 - -
Viun9g01650 322 CDD SANT 69 112 IPR001005 -
Viun9g01650 322 MobiDBLite consensus disorder prediction 202 221 - -
Viun9g01650 322 MobiDBLite consensus disorder prediction 131 165 - -
Viun9g01650 322 CDD SANT 16 61 IPR001005 -
Viun9g01650 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun9g01650 322 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun9g01650 322 Gene3D - 68 138 - -
Viun9g01650 322 Gene3D - 14 66 - -
Viun9g01650 322 Coils Coil 322 322 - -
Viun9g01650 322 FunFam MYB-related transcription factor 13 66 - -
Viun9g01650 322 SMART sant 13 63 IPR001005 -
Viun9g01650 322 SMART sant 66 114 IPR001005 -
Viun9g01650 322 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun9g01650 322 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Viun9g01650 322 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Viun9g01650 322 FunFam Myb transcription factor 68 137 - -
Viun9g01650 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01650 Viun-Chr9 24785179 24786884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01650 1 239 MYB Transcription Factor Family AT4G09460 57.741 6.07e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun9g01650 Myb_DNA-binding 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01650 K09422 - gmx:778033 457.218