Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01597 ATGGAGCCAAGATCGCATTCCACTGAAAGAGAAGAGGAATATGATTTGTTCCCAGTATACTCCGAAAGGTCACAACAAGACATGTCAGCCATGGTCTCTGCGCTCACACAAGTCATAGGTGGTTCCAACAATGATTCTCTTCACCACCATGAAGACCCCTTCACTTCTTCCGACAACACCTCATCCCAGAATAATAATGAACAATCACAAGTGCCACAACAAGATCAAGGGAGTGGAAGAAGAAGACACTATAGAGGAGTGAGGCAGCGTCCATGGGGGAAATGGGCTGCAGAGATTCGTGATCCGAAGAAGGCAGCGAGGGTATGGCTTGGAACTTTCGAAACTGCAGAAGCTGCAGCTCTTGCTTACGATGAAGCTGCTCTCAGATTCAAAGGAAGCAAAGCCAAGCTCAATTTCCCTGAGAGGGTTCAAGGCACTGCCGAATTTGGTTACCTCACAAATCAACACCTCTCATCAACCACAACTGCCACTGCTCAATCTTCAAATCCTGTTACTCAACACTTCGCTCAACAAACCTATTCACCAAACTATCACTATCCACAACAAATCATGCCTGCAACTGGAAGTAACACCTTCAATAACCAAGACATGCTTGGTTTCTATGGGGGAGACATGTTTCTTTCTTCTTCTTCTTCTTCTTCGTCTTCTTCTTCTTCAGCTCTCTCTCAGCAGCAAGAACAGTTCCTGAGGTTTTCGACTCAGTTCGGAGGTTCTTCTTCTGAGCCTCCTAGGAATTGGAGGGGTGATGGATATTGA 777 0.4595 MEPRSHSTEREEEYDLFPVYSERSQQDMSAMVSALTQVIGGSNNDSLHHHEDPFTSSDNTSSQNNNEQSQVPQQDQGSGRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTAEFGYLTNQHLSSTTTATAQSSNPVTQHFAQQTYSPNYHYPQQIMPATGSNTFNNQDMLGFYGGDMFLSSSSSSSSSSSSALSQQQEQFLRFSTQFGGSSSEPPRNWRGDGY 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01597 258 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Viun9g01597 258 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Viun9g01597 258 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Viun9g01597 258 MobiDBLite consensus disorder prediction 22 44 - -
Viun9g01597 258 FunFam Ethylene-responsive transcription factor 2 82 141 - -
Viun9g01597 258 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Viun9g01597 258 Gene3D AP2/ERF domain 82 142 IPR036955 GO:0003700|GO:0006355
Viun9g01597 258 MobiDBLite consensus disorder prediction 238 258 - -
Viun9g01597 258 MobiDBLite consensus disorder prediction 1 18 - -
Viun9g01597 258 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Viun9g01597 258 PANTHER DNA-BINDING DOMAIN 48 223 IPR044808 GO:0003700|GO:0009873
Viun9g01597 258 MobiDBLite consensus disorder prediction 56 77 - -
Viun9g01597 258 MobiDBLite consensus disorder prediction 1 89 - -
Viun9g01597 258 CDD AP2 83 141 IPR001471 GO:0003700|GO:0006355
Viun9g01597 258 SUPERFAMILY DNA-binding domain 83 141 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01597 Viun-Chr9 23608570 23610508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01597 15 155 AP2-EREBP Transcription Factor Family AT5G61890 67.808 2.42e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun9g01597 AP2 3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01597 - - gmx:100787091 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01597 9 23608570 23610508 Viun9g01597 9 23608570 23610508 ECH
Viun3g00700 3 4347736 4352111 Viun9g01597 9 23608570 23610508 ECH
Viun3g00700 3 4347736 4352111 Viun9g01597 9 23608570 23610508 PCT