Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01589 ATGCCTTCTGAAATAATGGAGAAGAGGGGTGTGTCTGCCTCATCCCACTTTTTGGATGACATTTCCTATGCTTCTGAGAAGAATATTGGATTACGGAAGCCAAAATCTATTCATGACCATTTTATACAGGGCAAGAGTGAAATGACGGCATCACCTGGCTCTATTTTGAATACTTCATCACCCCGTTCAACAAATGGACAATCTGGCTTGCCAATCTCTCATACTACTCTATCTGGGGAAATTACAGGAGACCTACATTTTGGCAGAGAAGCAGGCACTATAGAGATGCTGAAGGATTCCACTGAATCCCGTAATTATACTAAAAGGTCATGGTCTAATGTGCATAGGCAGCCAGCATCTAGCTCATATGGTCTAATTGGGAGCAAGATTGTCACCAATGCTGCCTCACGTGAAAGTAGTCTATTTTCAAGCTCGCTGTCTGAGGTGTTTAGCCAAAAGTTGAGGTTATTGGGGAATGGAATGTCATCTGGTCAACCCATTACTGTTGGTTCCCTTCCTGAGGAAGAACCACATAAATCTCTAGGAGAAATTGAGGCTGACACTATTGGAAATCTCCTTCCTGATGAAGATGACCTTTTTTCTGGAGTCACTAACGAGTTAGGATGCAGTACTCGTGCTAGAATGAATGATGATTTTGAAGATTTTGATTTGTTCAGCAGCAGTGGAGGCATGGAATTGGAAGGAGATGAACTTCTAATTCCTGGAAAGGGAACCAGTTTCATTGATGAAGATCCTGATTACTTTGGAGCCTCTAAAGGAAAAATTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATCAATAGTAATGTTGAAGACTCTGAACTTAAGGCTCTCTTTGAGCAATATGGAGATATTCGAACCATATACACTGCTTGCAAGCATCGTGGGTTTGTTATGATTTCATATTATGATCTAAGGGCAGCACAAAATGCAATGAAGGCACTTCAAAATAGGTCATTGAGATCTAGGAAGCTAGATATACATTACTCAATTCCAAAGGGCAATGCTCCAGAGAAAGATATTGGCCATGGTACACTGATGATATCTGATCTTGATTCATCTGTATTGAATGATGAACTTAAACAGATATTTGGGTTTTATGGAGAAATTAGAGATATCTATGAATATCCACAATTGAATCAAGTCAAATTTATCGAATTTTATGATGTTCGAGCTGCAGAAGCTTCTCTTCGTGCATTGAATGGGATCTGCTTTGCTGGGAAGCACATTAAGCTTGAGCCCGGCCATCCCATGATTGCAACATGTATGATGCAGCAGTCTCAGAAGGGACAAGATGAACCTGATCTTGGTCATAGTCTTAGTGACAACATTTCCTTAAGACATAAGGCAGGAGTGTCATCTAGATTTATTGCATCTGCTGGCAGCTTGGAAAATGGATATAATCAAGGATTTCATTCTGCAACACAGCTACCTGCTTTCATTGATAACTCACTATTTAATATGAATTCTAACATTCACAAGACCGCAAGAGGGGCATCTACTGGAAAAGTATCTGGTGTTTTTGAGTCCAGTAACACTATTGACGCTATGAAATTTGCATCTGTTTCGAGGTTCCATCCTCATTCTTTACCTGAATATCGTGATAGTTTAGCTAATGGCAGTCCTTACAACTATTCAAGTACCATTAACATGGCTGCCAATATTGGAAATGGATCAACGGAATCATCTGAGAGCAGACACATTCAGGGAATAAATTCAACTGGGAACCTAGCAGAGTTTAATGCAGGAGGAAATGGAAACCGCTCCAATCATGGACTTTATCATATGTGGAATGGCTCCAACTTGCATCAACAACCTCCTTCAAATGCCATGCTTTGGCAGAAAACACCATCCTTCGTTAATGGTGCTGGTTCTCCATGTCTTCCACAGATACCCAGCTTTCCTAGAACACCTCCCCATGTGCTGAGAGCATCACATATAGACCATCAAGTGGGATCAGCACCGGTTGTTACAGCCTCACCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCACCTGATGGTTCTGGTTTTAGATTGGGTTCTGTGGGAAGTCCCGGCTTTCATGGTAGCTGGCAGATGCATCCTCCTGCTTCTCACAACATATTTTCTCATGTTAGTGGGAATGGTACAGAATTGACATCAAATACTGGGCAAGGCTCTCCTAAGCAATTATCACATGTTTTACCTGGGAGACTTCCCATGAATTTGGTTTCTAAATTTGATTCTAGCAATGAACGCATGAGAAACCTCTATCCTCGAAGAAACGAACCAAACACTAACAACAATGCAGATAAGAAACAGTACGAACTTGACCTAGGCCGCATATTACGTGGTGATGACAGCCGAACAACGCTCATGATAAAAAATATTCCCAATAAGTATACTTCAAAGATGCTTCTTGCTGCCATTGATGAACAATGTCGAGGAACATATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATTATTCCATTCCACAAGGCCTTTAACGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTCCTCGCATATGCCCGAATTCAAGGAAAAGCTGCTCTCATTGCTCATTTTCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTTTTCCATACAGATGGCCCAAATGCTGGCGATCCGGAGCCTTTCCCATTGGGTAACAATATTAGAGTGAGGCCTGGGAAATCTCGCGCAAATGGTAGTGAGGAGAATCGCAGCCAAGGGAATCCTTCATCTTTTGCAAATGGTGAAGAGTCTGGGAATGGAATGGAATCATCTTCGATCTCTTAA 2898 0.4117 MPSEIMEKRGVSASSHFLDDISYASEKNIGLRKPKSIHDHFIQGKSEMTASPGSILNTSSPRSTNGQSGLPISHTTLSGEITGDLHFGREAGTIEMLKDSTESRNYTKRSWSNVHRQPASSSYGLIGSKIVTNAASRESSLFSSSLSEVFSQKLRLLGNGMSSGQPITVGSLPEEEPHKSLGEIEADTIGNLLPDEDDLFSGVTNELGCSTRARMNDDFEDFDLFSSSGGMELEGDELLIPGKGTSFIDEDPDYFGASKGKIPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMKALQNRSLRSRKLDIHYSIPKGNAPEKDIGHGTLMISDLDSSVLNDELKQIFGFYGEIRDIYEYPQLNQVKFIEFYDVRAAEASLRALNGICFAGKHIKLEPGHPMIATCMMQQSQKGQDEPDLGHSLSDNISLRHKAGVSSRFIASAGSLENGYNQGFHSATQLPAFIDNSLFNMNSNIHKTARGASTGKVSGVFESSNTIDAMKFASVSRFHPHSLPEYRDSLANGSPYNYSSTINMAANIGNGSTESSESRHIQGINSTGNLAEFNAGGNGNRSNHGLYHMWNGSNLHQQPPSNAMLWQKTPSFVNGAGSPCLPQIPSFPRTPPHVLRASHIDHQVGSAPVVTASPWERQHSYLGESPDGSGFRLGSVGSPGFHGSWQMHPPASHNIFSHVSGNGTELTSNTGQGSPKQLSHVLPGRLPMNLVSKFDSSNERMRNLYPRRNEPNTNNNADKKQYELDLGRILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHKAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKSRANGSEENRSQGNPSSFANGEESGNGMESSSIS 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01589 965 CDD RRM1_MEI2_like 269 344 IPR034453 -
Viun9g01589 965 MobiDBLite consensus disorder prediction 905 965 - -
Viun9g01589 965 SMART rrm1_1 271 339 IPR000504 GO:0003723
Viun9g01589 965 SMART rrm1_1 356 424 IPR000504 GO:0003723
Viun9g01589 965 SMART rrm1_1 796 874 IPR000504 GO:0003723
Viun9g01589 965 MobiDBLite consensus disorder prediction 49 68 - -
Viun9g01589 965 PANTHER RNA RECOGNITION MOTIF-CONTAINING 45 960 - -
Viun9g01589 965 FunFam MEI2-like protein 5 isoform 2 259 353 - -
Viun9g01589 965 CDD RRM3_MEI2_like 797 882 IPR034454 -
Viun9g01589 965 FunFam Protein MEI2-like 1 354 448 - -
Viun9g01589 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Viun9g01589 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 336 IPR000504 GO:0003723
Viun9g01589 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Viun9g01589 965 SUPERFAMILY RNA-binding domain, RBD 267 424 IPR035979 GO:0003676
Viun9g01589 965 Gene3D - 264 352 IPR012677 -
Viun9g01589 965 Gene3D - 353 449 IPR012677 -
Viun9g01589 965 Pfam RNA recognition motif 2 794 890 IPR007201 -
Viun9g01589 965 SUPERFAMILY RNA-binding domain, RBD 796 881 IPR035979 GO:0003676
Viun9g01589 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Viun9g01589 965 MobiDBLite consensus disorder prediction 936 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01589 Viun-Chr9 23435836 23444147 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01589 265 421 Eukaryotic Initiation Factors Gene Family AT3G16380 25.843 4.00e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01589 - - gmx:100797616 1701.41