Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01588 ATGCCTTCTGAAATAATGGAGAAGAGGGGTGTGTCTGCCTCATCCCACTTTTTGGATGACATTTCCTATGCTTCTGAGAATATTGGATTACGGAAGCCAAAATCTATTCATGACCATTTTATACAGGGCAAGAGTGAAATGACGGCATCACCTGGCTCTATTTTGAATACTTCATCACCCCGTTCAACAAATGGACAATCTGGCTTGCCAATCTCTCATACTACTCTATCTGGGGAAATTACAGGAGACCTACATTTTGGCAGAGAAGCAGGCACTATAGAGATGCTGAAGGATTCCACTGAATCCCGTAATTATACTAAAAGGTCATGGTCTAATGTGCATAGGCAGCCAGCATCTAGCTCATATGGTCTAATTGGGAGCAAGATTGTCACCAATGCTGCCTCACGTGAAAGTAGTCTATTTTCAAGCTCGCTGTCTGAGGTGTTTAGCCAAAAGTTGAGGTTATTGGGGAATGGAATGTCATCTGGTCAACCCATTACTGTTGGTTCCCTTCCTGAGGAAGAACCACATAAATCTCTAGGAGAAATTGAGGCTGACACTATTGGAAATCTCCTTCCTGATGAAGATGACCTTTTTTCTGGAGTCACTAACGAGTTAGGATGCAGTACTCGTGCTAGAATGAATGATGATTTTGAAGATTTTGATTTGTTCAGCAGCAGTGGAGGCATGGAATTGGAAGGAGATGAACTTCTAATTCCTGGAAAGGGAACCAGTTTCATTGATGAAGATCCTGATTACTTTGGAGCCTCTAAAGGAAAAATTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATCAATAGTAATGTTGAAGACTCTGAACTTAAGGCTCTCTTTGAGCAATATGGAGATATTCGAACCATATACACTGCTTGCAAGCATCGTGGGTTTGTTATGATTTCATATTATGATCTAAGGGCAGCACAAAATGCAATGAAGGCACTTCAAAATAGGTCATTGAGATCTAGGAAGCTAGATATACATTACTCAATTCCAAAGGGCAATGCTCCAGAGAAAGATATTGGCCATGGTACACTGATGATATCTGATCTTGATTCATCTGTATTGAATGATGAACTTAAACAGATATTTGGGTTTTATGGAGAAATTAGAGATATCTATGAATATCCACAATTGAATCAAGTCAAATTTATCGAATTTTATGATGTTCGAGCTGCAGAAGCTTCTCTTCGTGCATTGAATGGGATCTGCTTTGCTGGGAAGCACATTAAGCTTGAGCCCGGCCATCCCATGATTGCAACATGTATGATGCAGCAGTCTCAGAAGGGACAAGATGAACCTGATCTTGGTCATAGTCTTAGTGACAACATTTCCTTAAGACATAAGGCAGGAGTGTCATCTAGATTTATTGCATCTGCTGGCAGCTTGGAAAATGGATATAATCAAGGATTTCATTCTGCAACACAGCTACCTGCTTTCATTGATAACTCACTATTTAATATGAATTCTAACATTCACAAGACCGCAAGAGGGGCATCTACTGGAAAAGTATCTGGTGTTTTTGAGTCCAGTAACACTATTGACGCTATGAAATTTGCATCTGTTTCGAGGTTCCATCCTCATTCTTTACCTGAATATCGTGATAGTTTAGCTAATGGCAGTCCTTACAACTATTCAAGTACCATTAACATGGCTGCCAATATTGGAAATGGATCAACGGAATCATCTGAGAGCAGACACATTCAGGGAATAAATTCAACTGGGAACCTAGCAGAGTTTAATGCAGGAGGAAATGGAAACCGCTCCAATCATGGACTTTATCATATGTGGAATGGCTCCAACTTGCATCAACAACCTCCTTCAAATGCCATGCTTTGGCAGAAAACACCATCCTTCGTTAATGGTGCTGGTTCTCCATGTCTTCCACAGATACCCAGCTTTCCTAGAACACCTCCCCATGTGCTGAGAGCATCACATATAGACCATCAAGTGGGATCAGCACCGGTTGTTACAGCCTCACCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCACCTGATGGTTCTGGTTTTAGATTGGGTTCTGTGGGAAGTCCCGGCTTTCATGGTAGCTGGCAGATGCATCCTCCTGCTTCTCACAACATATTTTCTCATGTTAGTGGGAATGGTACAGAATTGACATCAAATACTGGGCAAGGCTCTCCTAAGCAATTATCACATGTTTTACCTGGGAGACTTCCCATGAATTTGGTTTCTAAATTTGATTCTAGCAATGAACGCATGAGAAACCTCTATCCTCGAAGAAACGAACCAAACACTAACAACAATGCAGATAAGAAACAGTACGAACTTGACCTAGGCCGCATATTACGTGGTGATGACAGCCGAACAACGCTCATGATAAAAAATATTCCCAATAAGTATACTTCAAAGATGCTTCTTGCTGCCATTGATGAACAATGTCGAGGAACATATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATTATTCCATTCCACAAGGCCTTTAACGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTCCTCGCATATGCCCGAATTCAAGGAAAAGCTGCTCTCATTGCTCATTTTCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTTTTCCATACAGATGGCCCAAATGCTGGCGATCCGGAGCCTTTCCCATTGGGTAACAATATTAGAGTGAGGCCTGGGAAATCTCGCGCAAATGGTAGTGAGGAGAATCGCAGCCAAGGGAATCCTTCATCTTTTGCAAATGGTGAAGAGTCTGGGAATGGAATGGAATCATCTTCGATCTCTTAA 2895 0.4117 MPSEIMEKRGVSASSHFLDDISYASENIGLRKPKSIHDHFIQGKSEMTASPGSILNTSSPRSTNGQSGLPISHTTLSGEITGDLHFGREAGTIEMLKDSTESRNYTKRSWSNVHRQPASSSYGLIGSKIVTNAASRESSLFSSSLSEVFSQKLRLLGNGMSSGQPITVGSLPEEEPHKSLGEIEADTIGNLLPDEDDLFSGVTNELGCSTRARMNDDFEDFDLFSSSGGMELEGDELLIPGKGTSFIDEDPDYFGASKGKIPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMKALQNRSLRSRKLDIHYSIPKGNAPEKDIGHGTLMISDLDSSVLNDELKQIFGFYGEIRDIYEYPQLNQVKFIEFYDVRAAEASLRALNGICFAGKHIKLEPGHPMIATCMMQQSQKGQDEPDLGHSLSDNISLRHKAGVSSRFIASAGSLENGYNQGFHSATQLPAFIDNSLFNMNSNIHKTARGASTGKVSGVFESSNTIDAMKFASVSRFHPHSLPEYRDSLANGSPYNYSSTINMAANIGNGSTESSESRHIQGINSTGNLAEFNAGGNGNRSNHGLYHMWNGSNLHQQPPSNAMLWQKTPSFVNGAGSPCLPQIPSFPRTPPHVLRASHIDHQVGSAPVVTASPWERQHSYLGESPDGSGFRLGSVGSPGFHGSWQMHPPASHNIFSHVSGNGTELTSNTGQGSPKQLSHVLPGRLPMNLVSKFDSSNERMRNLYPRRNEPNTNNNADKKQYELDLGRILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHKAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKSRANGSEENRSQGNPSSFANGEESGNGMESSSIS 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01588 964 SUPERFAMILY RNA-binding domain, RBD 266 423 IPR035979 GO:0003676
Viun9g01588 964 MobiDBLite consensus disorder prediction 935 964 - -
Viun9g01588 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 342 IPR000504 GO:0003723
Viun9g01588 964 SUPERFAMILY RNA-binding domain, RBD 795 880 IPR035979 GO:0003676
Viun9g01588 964 CDD RRM3_MEI2_like 796 881 IPR034454 -
Viun9g01588 964 MobiDBLite consensus disorder prediction 904 964 - -
Viun9g01588 964 Gene3D - 263 351 IPR012677 -
Viun9g01588 964 PANTHER RNA RECOGNITION MOTIF-CONTAINING 44 959 - -
Viun9g01588 964 FunFam Protein MEI2-like 1 353 447 - -
Viun9g01588 964 FunFam MEI2-like protein 5 isoform 2 258 352 - -
Viun9g01588 964 Pfam RNA recognition motif 2 793 889 IPR007201 -
Viun9g01588 964 CDD RRM1_MEI2_like 268 343 IPR034453 -
Viun9g01588 964 Gene3D - 352 448 IPR012677 -
Viun9g01588 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 427 IPR000504 GO:0003723
Viun9g01588 964 SMART rrm1_1 270 338 IPR000504 GO:0003723
Viun9g01588 964 SMART rrm1_1 355 423 IPR000504 GO:0003723
Viun9g01588 964 SMART rrm1_1 795 873 IPR000504 GO:0003723
Viun9g01588 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 335 IPR000504 GO:0003723
Viun9g01588 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 421 IPR000504 GO:0003723
Viun9g01588 964 MobiDBLite consensus disorder prediction 48 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01588 Viun-Chr9 23435836 23444147 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01588 264 420 Eukaryotic Initiation Factors Gene Family AT3G16380 25.843 3.89e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01588 - - gmx:100797616 1694.86