Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01587 ATGCCTTCTGAAATAATGGAGAAGAGGGGTGTGTCTGCCTCATCCCACTTTTTGGATGACATTTCCTATGCTTCTGAGAAGAATATTGGATTACGGAAGCCAAAATCTATTCATGACCATTTTATACAGGGCAAGAGTGAAATGACGGCATCACCTGGCTCTATTTTGAATACTTCATCACCCCGTTCAACAAATGGACAATCTGGCTTGCCAATCTCTCATACTACTCTATCTGGGGAAATTACAGGAGACCTACATTTTGGCAGAGAAGCAGGCACTATAGAGATGCTGAAGGATTCCACTGAATCCCGTAATTATACTAAAAGGTCATGGTCTAATGTGCATAGGCAGCCAGCATCTAGCTCATATGGTCTAATTGGGAGCAAGATTGTCACCAATGCTGCCTCACGTGAAAGTAGTCTATTTTCAAGCTCGCTGTCTGAGGTGTTTAGCCAAAAGTTGAGGTTATTGGGGAATGGAATGTCATCTGGTCAACCCATTACTGTTGGTTCCCTTCCTGAGGAAGAACCACATAAATCTCTAGGAGAAATTGAGGCTGACACTATTGGAAATCTCCTTCCTGATGAAGATGACCTTTTTTCTGGAGTCACTAACGAGTTAGGATGCAGTACTCGTGCTAGAATGAATGATGATTTTGAAGATTTTGATTTGTTCAGCAGCAGTGGAGGCATGGAATTGGAAGGAGATGAACTTCTAATTCCTGGAAAGGGAACCAGTTTCATTGATGAAGATCCTGATTACTTTGGAGCCTCTAAAGGAAAAATTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATCAATAGTAATGTTGAAGACTCTGAACTTAAGGCTCTCTTTGAGCAATATGGAGATATTCGAACCATATACACTGCTTGCAAGCATCGTGGGTTTGTTATGATTTCATATTATGATCTAAGGGCAGCACAAAATGCAATGAAGGCACTTCAAAATAGGTCATTGAGATCTAGGAAGCTAGATATACATTACTCAATTCCAAAGGGCAATGCTCCAGAGAAAGATATTGGCCATGGTACACTGATGATATCTGATCTTGATTCATCTGTATTGAATGATGAACTTAAACAGATATTTGGGTTTTATGGAGAAATTAGAGATATCTATGAATATCCACAATTGAATCAAGTCAAATTTATCGAATTTTATGATGTTCGAGCTGCAGAAGCTTCTCTTCGTGCATTGAATGGGATCTGCTTTGCTGGGAAGCACATTAAGCTTGAGCCCGGCCATCCCATGATTGCAACATGTATGATGCAGCAGTCTCAGAAGGGACAAGATGAACCTGATCTTGGTCATAGTCTTAGTGACAACATTTCCTTAAGACATAAGGGAGTGTCATCTAGATTTATTGCATCTGCTGGCAGCTTGGAAAATGGATATAATCAAGGATTTCATTCTGCAACACAGCTACCTGCTTTCATTGATAACTCACTATTTAATATGAATTCTAACATTCACAAGACCGCAAGAGGGGCATCTACTGGAAAAGTATCTGGTGTTTTTGAGTCCAGTAACACTATTGACGCTATGAAATTTGCATCTGTTTCGAGGTTCCATCCTCATTCTTTACCTGAATATCGTGATAGTTTAGCTAATGGCAGTCCTTACAACTATTCAAGTACCATTAACATGGCTGCCAATATTGGAAATGGATCAACGGAATCATCTGAGAGCAGACACATTCAGGGAATAAATTCAACTGGGAACCTAGCAGAGTTTAATGCAGGAGGAAATGGAAACCGCTCCAATCATGGACTTTATCATATGTGGAATGGCTCCAACTTGCATCAACAACCTCCTTCAAATGCCATGCTTTGGCAGAAAACACCATCCTTCGTTAATGGTGCTGGTTCTCCATGTCTTCCACAGATACCCAGCTTTCCTAGAACACCTCCCCATGTGCTGAGAGCATCACATATAGACCATCAAGTGGGATCAGCACCGGTTGTTACAGCCTCACCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCACCTGATGGTTCTGGTTTTAGATTGGGTTCTGTGGGAAGTCCCGGCTTTCATGGTAGCTGGCAGATGCATCCTCCTGCTTCTCACAACATATTTTCTCATGTTAGTGGGAATGGTACAGAATTGACATCAAATACTGGGCAAGGCTCTCCTAAGCAATTATCACATGTTTTACCTGGGAGACTTCCCATGAATTTGGTTTCTAAATTTGATTCTAGCAATGAACGCATGAGAAACCTCTATCCTCGAAGAAACGAACCAAACACTAACAACAATGCAGATAAGAAACAGTACGAACTTGACCTAGGCCGCATATTACGTGGTGATGACAGCCGAACAACGCTCATGATAAAAAATATTCCCAATAAGTATACTTCAAAGATGCTTCTTGCTGCCATTGATGAACAATGTCGAGGAACATATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATTATTCCATTCCACAAGGCCTTTAACGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTCCTCGCATATGCCCGAATTCAAGGAAAAGCTGCTCTCATTGCTCATTTTCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTTTTCCATACAGATGGCCCAAATGCTGGCGATCCGGAGCCTTTCCCATTGGGTAACAATATTAGAGTGAGGCCTGGGAAATCTCGCGCAAATGGTAGTGAGGAGAATCGCAGCCAAGGGAATCCTTCATCTTTTGCAAATGGTGAAGAGTCTGGGAATGGAATGGAATCATCTTCGATCTCTTAA 2895 0.4114 MPSEIMEKRGVSASSHFLDDISYASEKNIGLRKPKSIHDHFIQGKSEMTASPGSILNTSSPRSTNGQSGLPISHTTLSGEITGDLHFGREAGTIEMLKDSTESRNYTKRSWSNVHRQPASSSYGLIGSKIVTNAASRESSLFSSSLSEVFSQKLRLLGNGMSSGQPITVGSLPEEEPHKSLGEIEADTIGNLLPDEDDLFSGVTNELGCSTRARMNDDFEDFDLFSSSGGMELEGDELLIPGKGTSFIDEDPDYFGASKGKIPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMKALQNRSLRSRKLDIHYSIPKGNAPEKDIGHGTLMISDLDSSVLNDELKQIFGFYGEIRDIYEYPQLNQVKFIEFYDVRAAEASLRALNGICFAGKHIKLEPGHPMIATCMMQQSQKGQDEPDLGHSLSDNISLRHKGVSSRFIASAGSLENGYNQGFHSATQLPAFIDNSLFNMNSNIHKTARGASTGKVSGVFESSNTIDAMKFASVSRFHPHSLPEYRDSLANGSPYNYSSTINMAANIGNGSTESSESRHIQGINSTGNLAEFNAGGNGNRSNHGLYHMWNGSNLHQQPPSNAMLWQKTPSFVNGAGSPCLPQIPSFPRTPPHVLRASHIDHQVGSAPVVTASPWERQHSYLGESPDGSGFRLGSVGSPGFHGSWQMHPPASHNIFSHVSGNGTELTSNTGQGSPKQLSHVLPGRLPMNLVSKFDSSNERMRNLYPRRNEPNTNNNADKKQYELDLGRILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHKAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKSRANGSEENRSQGNPSSFANGEESGNGMESSSIS 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01587 964 CDD RRM1_MEI2_like 269 344 IPR034453 -
Viun9g01587 964 MobiDBLite consensus disorder prediction 935 964 - -
Viun9g01587 964 MobiDBLite consensus disorder prediction 49 68 - -
Viun9g01587 964 SUPERFAMILY RNA-binding domain, RBD 795 880 IPR035979 GO:0003676
Viun9g01587 964 CDD RRM3_MEI2_like 796 881 IPR034454 -
Viun9g01587 964 MobiDBLite consensus disorder prediction 904 964 - -
Viun9g01587 964 FunFam MEI2-like protein 5 isoform 2 259 353 - -
Viun9g01587 964 FunFam Protein MEI2-like 1 354 448 - -
Viun9g01587 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 343 IPR000504 GO:0003723
Viun9g01587 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 422 IPR000504 GO:0003723
Viun9g01587 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 336 IPR000504 GO:0003723
Viun9g01587 964 SUPERFAMILY RNA-binding domain, RBD 267 424 IPR035979 GO:0003676
Viun9g01587 964 Gene3D - 264 352 IPR012677 -
Viun9g01587 964 Gene3D - 353 449 IPR012677 -
Viun9g01587 964 Pfam RNA recognition motif 2 793 889 IPR007201 -
Viun9g01587 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 428 IPR000504 GO:0003723
Viun9g01587 964 SMART rrm1_1 271 339 IPR000504 GO:0003723
Viun9g01587 964 SMART rrm1_1 356 424 IPR000504 GO:0003723
Viun9g01587 964 SMART rrm1_1 795 873 IPR000504 GO:0003723
Viun9g01587 964 PANTHER RNA RECOGNITION MOTIF-CONTAINING 45 959 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01587 Viun-Chr9 23435836 23444147 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01587 265 421 Eukaryotic Initiation Factors Gene Family AT3G16380 25.843 3.99e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01587 - - gmx:100797616 1695.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01587 9 23435836 23444147 Viun9g01587 9 23435836 23444147 ECH
Viun3g00695 3 4314561 4321994 Viun9g01587 9 23435836 23444147 PCT