Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01583 ATGGATTTCTCAAAACTCAATGACTCGCCCATGTTCCGGCAACAGCTTCAGTGCATGGAAGAGAGTGCAGAATCGTTACGCGCGAGATGTTTCAAGTTCTACAAAGGAACTCGAAAGTACACGGAAGGGCTTGGAGATGCATATGATGGAGATATTGCATTTGCAAGTGCTCTTGAAAATTTTGGAGGAGGGCATAATGATCCTCTGTTTGTGACTTTGGGAGGACCAGTTATGACCAAATTTGCTATTGCATTCAGAGAAATGGGTACACATAAGGAAGTTCTTCGGTCACAGGCGGAGCACATGCTAAATGACCGATTACTGAACATGCTAAACGTGGATATCCTAGATGTCAAGGAAGCTCGAAGGCGATTTGAGAAAGCTTCCATTGTACATGATCAGGCACGTGAGAAGTTTATGTCACTAAGAAAAAGCACTAAGATTGATGTTGCCACTGTCGTAGAAGAGGAATTGCACAATGCAAGAACCTCCTTTGAGGAATCTCGTTTCAATTTGGTTAGTGCTCTTCATAATGTTGAGGCCAAGAAGAGGTTTGAGTTTTTGGAGGCTGTCACTGGTGTTATGGATGCTCATCTTCGGTATTATCGACAGGGATATCAGCTATTACATGAGTTGGAGCCTTTCATCGTCGAGGTTTTGGCTTACACCCAAAAGGCAAGAGAAAGTTACAATGAAGAGCAGATTCGTCTTTGTGAAAGAATGCTGGAGTACAAAAAACACGTTCATCAAGAAAGCATGATGTCCTTGACTGGCCCTTATATTTCTCCCAGTAGAGATGGGAATCCAGTGCAGCCTTTTTCAAGGATATCAAATAAAGTGGCAGATGCTATAACAGAGTCTGCCGAAAATGGAAAGATTCAAATCATTCGACAAGGGTATCTCTCAAAGAGATCCTCAAGTTTGAGGGGTGATTGGAAGAGACGGTTCTTTGTTCTTGATAGTCGTGGAATGCTTTACTACTTTCGTAAACCATGGAATGGATTACATGGTAGCAGTCAATCACTACATAGAAATTGTGCCACCGATAACAGTGCTGGAATTTTGAGTCGCCTTCTTTCTTCACATTACCATGGAGCTATGCCTGATGACAAATGTGTAGCACGTCACACAGTGAACCTTCTCACATCAACAATCAAGTCTGATGCTGAACAATCTGATTTAAGGTTCTGCTTCAGGATTATTTCACCCTCAAAGAGTTACACCTTGCAGGCAGAAAATGCTGTGGATCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTACTTCCTTATTGAGTGTACAGACACTGTCTGATGTGTCAGAAAATGGTAACGGTCCCTCTGCCAACAAGCTTCTTTTGTTACAAGGTTCTCCAGATGATGATCTAGCATTGCATGGGGATTCTATGTCATCCGAAGACTCGCAAAAGAATAAGCAAAGTTCAAAAAGTGAAAAGCCAATTGATATTCTTAGAAAAGTTAGTGGCAATGACAAATGTGCTGATTGCGGCAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCCGGTGTCCACCGGAATCTTGGTGTACATTTATCAAAAGTAAGATCACTGACCCTTGATGTAAAAGTATGGGATTCAGCTGTCTTGAGCATGCTTCAGTCACTGGGGAATCTCTTTGCCAACTCAGTTTGGGAGGAACTGTTGCAATCGTCAGGTTCTTCACAAATAGATGAGAATCCTGATGGATCCAAGCCGCAAAAGAAGTTATTTCATGCAAGAAAACCATCACATGATGACCCTATTTCACTCAAGGAGAGGTTCATTCATGCAAAGTATGATGCAAAAGTGTTTGTTTGCCGGGTAAAGAACAACGTTCTCCTTTCACAACAGGTGGCAGAAAGCATCAATGCCAATGACAAGAGAGCAGTGTATCGACACATTGTAAAATCAGACGTAAATGTCAATGCTATTAGTCGTGAAGCAGGTACATTTAATCCTAGAAAAAAAATGCTCCAATTGAAAAAGCAGAAAGCCCTATTAGTAATAATGCATTGTTGTGCAGGCTTTTCTTGCAACATGCCTTTTTCAACTCATGATCCAAACACGTCATGTGAAAACTCAACTCAACCGGTGGAAGACGTACAAGATGGTTCTAGTGTGCTTCACCTGGCATGCCGAAATTGTGATGTTGCAATGGTAGAGCTACTCCTACAGTATGGTGCAGACGTAAATGCTAGTGATTCTAAAGGAAAGACACCACTACATTACTGCACCATGATGGGGAAGCATGCAACTGCAAAAGTGCTTATTACAAGGGGGGCGAATCCACTTGCCGTAGACAAAGAAGGCAACACTCCTTTTAAGCTTGCACCTGAACCTGATCCTGTTGACAAAGATACTGTTCCTCTTAACTTGGAAACGACACCCCCTCAAAACTCACCAGAAAAATGA 2460 0.4203 MDFSKLNDSPMFRQQLQCMEESAESLRARCFKFYKGTRKYTEGLGDAYDGDIAFASALENFGGGHNDPLFVTLGGPVMTKFAIAFREMGTHKEVLRSQAEHMLNDRLLNMLNVDILDVKEARRRFEKASIVHDQAREKFMSLRKSTKIDVATVVEEELHNARTSFEESRFNLVSALHNVEAKKRFEFLEAVTGVMDAHLRYYRQGYQLLHELEPFIVEVLAYTQKARESYNEEQIRLCERMLEYKKHVHQESMMSLTGPYISPSRDGNPVQPFSRISNKVADAITESAENGKIQIIRQGYLSKRSSSLRGDWKRRFFVLDSRGMLYYFRKPWNGLHGSSQSLHRNCATDNSAGILSRLLSSHYHGAMPDDKCVARHTVNLLTSTIKSDAEQSDLRFCFRIISPSKSYTLQAENAVDQMDWMEKITGVITSLLSVQTLSDVSENGNGPSANKLLLLQGSPDDDLALHGDSMSSEDSQKNKQSSKSEKPIDILRKVSGNDKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHLSKVRSLTLDVKVWDSAVLSMLQSLGNLFANSVWEELLQSSGSSQIDENPDGSKPQKKLFHARKPSHDDPISLKERFIHAKYDAKVFVCRVKNNVLLSQQVAESINANDKRAVYRHIVKSDVNVNAISREAGTFNPRKKMLQLKKQKALLEXIMHCCAGFSCNMPFSTHDPNTSCENSTQPVEDVQDGSSVLHLACRNCDVAMVELLLQYGADVNASDSKGKTPLHYCTMMGKHATAKVLITRGANPLAVDKEGNTPFKLAPEPDPVDKDTVPLNLETTPPQNSPEK 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01583 820 SUPERFAMILY PH domain-like 294 441 - -
Viun9g01583 820 PRINTS HIV Rev interacting protein signature 516 533 IPR001164 GO:0005096
Viun9g01583 820 PRINTS HIV Rev interacting protein signature 539 560 IPR001164 GO:0005096
Viun9g01583 820 PRINTS HIV Rev interacting protein signature 497 516 IPR001164 GO:0005096
Viun9g01583 820 ProSiteProfiles ARF GTPase-activating proteins domain profile. 485 628 IPR001164 GO:0005096
Viun9g01583 820 ProSiteProfiles Ankyrin repeat region circular profile. 753 779 - -
Viun9g01583 820 CDD BAR_SFC_plant 15 215 IPR035670 -
Viun9g01583 820 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Viun9g01583 820 CDD ArfGap 488 615 - -
Viun9g01583 820 Gene3D Arf GTPase activating protein 465 629 IPR038508 -
Viun9g01583 820 MobiDBLite consensus disorder prediction 576 600 - -
Viun9g01583 820 ProSiteProfiles Ankyrin repeat profile. 720 752 IPR002110 GO:0005515
Viun9g01583 820 SMART ANK_2a 720 749 IPR002110 GO:0005515
Viun9g01583 820 SMART ANK_2a 753 782 IPR002110 GO:0005515
Viun9g01583 820 SMART arf_gap_3 485 628 IPR001164 GO:0005096
Viun9g01583 820 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 468 629 - -
Viun9g01583 820 MobiDBLite consensus disorder prediction 448 488 - -
Viun9g01583 820 Pfam Ankyrin repeats (many copies) 722 774 IPR002110 GO:0005515
Viun9g01583 820 PANTHER CENTAURIN/ARF 2 810 IPR045258 GO:0005096
Viun9g01583 820 SUPERFAMILY ArfGap/RecO-like zinc finger 485 622 IPR037278 -
Viun9g01583 820 SUPERFAMILY Ankyrin repeat 721 795 IPR036770 -
Viun9g01583 820 Gene3D - 287 443 IPR011993 -
Viun9g01583 820 ProSiteProfiles PH domain profile. 294 429 IPR001849 -
Viun9g01583 820 SUPERFAMILY BAR/IMD domain-like 6 317 IPR027267 -
Viun9g01583 820 MobiDBLite consensus disorder prediction 784 820 - -
Viun9g01583 820 MobiDBLite consensus disorder prediction 584 600 - -
Viun9g01583 820 Pfam PH domain 296 428 IPR001849 -
Viun9g01583 820 CDD PH_ACAP 297 433 - -
Viun9g01583 820 Pfam BAR domain of APPL family 6 233 IPR004148 GO:0005515|GO:0005737
Viun9g01583 820 Gene3D - 705 801 IPR036770 -
Viun9g01583 820 ProSiteProfiles Ankyrin repeat profile. 753 785 IPR002110 GO:0005515
Viun9g01583 820 SMART PH_update 295 431 IPR001849 -
Viun9g01583 820 ProSiteProfiles Ankyrin repeat region circular profile. 720 751 - -
Viun9g01583 820 Coils Coil 118 138 - -
Viun9g01583 820 Pfam Putative GTPase activating protein for Arf 488 620 IPR001164 GO:0005096
Viun9g01583 820 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01583 Viun-Chr9 23252582 23258504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01583 470 621 C2H2 Transcription Factor Family AT4G21160 39.869 1.23e-22 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01583 K12489 - gmx:100797073 1278.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01583 9 23252582 23258504 Viun9g01583 9 23252582 23258504 ECH
Viun3g00689 3 4247744 4275764 Viun9g01583 9 23252582 23258504 PCT