Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01580 ATGGCATCATCCGAGGTGACGATGAAGGGAAATTGCTCGAACCATATCGACGGCGGAGCTGTGGAGGCTCAGGCGCCGGCCACGGCCAAAGACGCAGAAGCTGCACTTTTCAGGGAACTGTGGCACGCGTGTGCCGGTCCTCTCGTGACCGTGCCGCGCGAAGGAGAGCGCGTGTTTTATTTTCCTCAGGGACATATCGAGCAGGTTGAGGCGTCGACGAATCAGGTGGCGGACCAGCACATGCCGGTTTACGATCTCCCACCCAAGATCCTTTGTCGGGTCATCAACGTGCAGCTGAAGGCCGAGCCCGACACGGATGAGGTGTTCGCTCAGGTCACCTTGCTTCCGGAGCCAAATCAAAATGAGAATGACGTGGAGAAAGAACCGCCACCGCCTCCGCCTCCGCGGTTTCACGTTCATTCTTTCTGTAAAACCCTGACAGCGTCCGACACCAGTACCCATGGTGGCTTTTCCGTGCTGAGACGGCATGCTGATGAATGCCTTCCCCCTCTGGATATGTCGAAGCAGCCACCCACTCAGGAATTGGCAGCTAAGGATCTTCATGGAAACGAATGGCGATTTAAACATATCTTTCGGGGTCAGCCCCGTAGACACTTGCTTCAGAGTGGTTGGAGTGTTTTTGTTAGCTCCAAAAGGCTTGTCGCTGGGGATGCGTTTATATTTCTTAGAGGTGAAAACGGGGAACTTCGAGTTGGTGTCAGGCGAGCAATGAGACAACAGGGTAATGTTCCATCCTCAGTGATCTCAAGTCACAGCATGCATCTTGGGGTCCTTGCAACTGCTTGGCATGCCATCTTGACGGGGACAATCTTCACTGTCTATTACAAGCCTAGGACTAGTCCCGCTGAATTTATTGTTCCGTATGACCAATATATGGAGTCTCTCAAAAACAGTTATACCATCGGGATGCGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCAGAGCAGAGGTTTACTGGTACAATTGTTGGAATTGAAGATTCTGATCCCAACAGGTGGAGAGAATCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACACCCCTCGTCCTGAGAGAGTTTCCCCATGGAAAATAGAGCCTGCTCTTGCGCCTCCGGCTCTAAATCCTCTTTCAATGCCCAGGACTAAAAGGCCTCGGTCTAACGCAGTTCCTTCATCTCCAGATTCATCTGTCCTTACTCGAGAAGCATCATCTAAAGTAAGCGTAGACCCTTCACCGGCAAATGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGGTGAAAGCAATGACTCTGATGCTGCTGAGAAATCTGTTGTTTGGCCGCCTGCTGCAGTAGATGATGAAAAGATTGATGCTTCTACGTCAAGGAGGTATGGGACGGAGAGCTGGATGTCAATGGGGAGGAACGAGCCAACATATTCTGATCTTCTTTCAAGCTTTGGGGCCGGAGGGGATCCTTCTCATTCATCCTTGATGGATCAAATGAGCCCTGTAGCTTATCCCACTAGAAAGCAATCGTCGGATCATGAAGGCAAACTTCACATGCCTCAGCCGTGGCCTGTAATGCCCTCCAGTCTTTCATTGAATATATTGGACTCTAATACGAAAGGTCCTGCACATGGTGGTGATCCAACTTACCAAGCTCGAGGGAATTTGAGGTACAGTGCATTTGGTGAATACCCTGCTCTGCATGGTCATAAAGTAGAGCACTCACATGGAAACTTGATGCCACCCCCATCTGCACCCCTAAATCAATATCAAAGTCCTTGTTCAAGAGAAGTTATGTCAAAACCAGTGTCAACAAAAACATTTGAGGCTGTGAAGTTAAAAGATGGTGACTGTAAGCTATTTGGCTTCTCACTTATCAGTGGCCCTATTGTACCAGAGCCTTCTGTATCGCAAAGAAATGTGAACGAACCTACTGGTCAGATGCATCTTACGCCACACCAACAAAGAACATCCGAAAATGATGAGAAGTCAGACCACTCAAAGGGCTCAAAAACTGCTGATGATCAAATTGTTGATGACCATGATAGACCATTACAGACTTCTCAGCTGCATGCGAAAGATGGTCAAGCTAAACCCCTCAGTAGTTCCGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGCATTGCACTCGGTAGGTCAGTGGACCTTACGAAGTACACCGGCTATGATGAATTAGTGGCTGAATTGGATCAGCTGTTTGAATTTGAGGGAGAGTTATTGTCAACTAAAAAAGATTGGCTTATTGTCTATACTGATAATGAGGGTGATATGATGCTTGTAGGCGATGATCCGTGGCAGGAATTCTGTGCCATGGTTCGCAAAATTTACATCTACCCTAAGGAGGAGATCCAGAAAATGAGCCCTGGTACCCTGAGCTCGAAAAATGAAGAGAACCTGTCGGGTAGTGAAGGTGCAGATGCAAAAGATGTTAAACGTCTGCCGCTTCAAAAGTTCAATTATGAAAATTGCCTTGACGCGTGA 2529 0.4812 MASSEVTMKGNCSNHIDGGAVEAQAPATAKDAEAALFRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQNENDVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELAAKDLHGNEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNSYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPNRWRESKWRCLKVRWDETSNTPRPERVSPWKIEPALAPPALNPLSMPRTKRPRSNAVPSSPDSSVLTREASSKVSVDPSPANGFPRVLQGQEFSTLRGNFGESNDSDAAEKSVVWPPAAVDDEKIDASTSRRYGTESWMSMGRNEPTYSDLLSSFGAGGDPSHSSLMDQMSPVAYPTRKQSSDHEGKLHMPQPWPVMPSSLSLNILDSNTKGPAHGGDPTYQARGNLRYSAFGEYPALHGHKVEHSHGNLMPPPSAPLNQYQSPCSREVMSKPVSTKTFEAVKLKDGDCKLFGFSLISGPIVPEPSVSQRNVNEPTGQMHLTPHQQRTSENDEKSDHSKGSKTADDQIVDDHDRPLQTSQLHAKDGQAKPLSSSARSCTKVHKKGIALGRSVDLTKYTGYDELVAELDQLFEFEGELLSTKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEENLSGSEGADAKDVKRLPLQKFNYENCLDA 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01580 842 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 35 803 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun9g01580 842 MobiDBLite consensus disorder prediction 803 823 - -
Viun9g01580 842 SUPERFAMILY DNA-binding pseudobarrel domain 138 271 IPR015300 -
Viun9g01580 842 MobiDBLite consensus disorder prediction 641 663 - -
Viun9g01580 842 SMART B3_2 142 244 IPR003340 GO:0003677
Viun9g01580 842 FunFam Auxin response factor 305 377 - -
Viun9g01580 842 Pfam AUX/IAA family 755 801 IPR033389 -
Viun9g01580 842 ProSiteProfiles PB1 domain profile. 714 796 IPR000270 GO:0005515
Viun9g01580 842 MobiDBLite consensus disorder prediction 386 416 - -
Viun9g01580 842 MobiDBLite consensus disorder prediction 641 688 - -
Viun9g01580 842 Pfam B3 DNA binding domain 142 243 IPR003340 GO:0003677
Viun9g01580 842 Gene3D - 305 375 - -
Viun9g01580 842 ProSiteProfiles B3 DNA-binding domain profile. 142 244 IPR003340 GO:0003677
Viun9g01580 842 FunFam Auxin response factor 140 244 - -
Viun9g01580 842 Gene3D - 139 244 IPR015300 -
Viun9g01580 842 FunFam Auxin response factor 709 803 - -
Viun9g01580 842 MobiDBLite consensus disorder prediction 664 688 - -
Viun9g01580 842 CDD B3_DNA 140 242 IPR003340 GO:0003677
Viun9g01580 842 Gene3D - 710 803 - -
Viun9g01580 842 SUPERFAMILY CAD & PB1 domains 714 791 - -
Viun9g01580 842 Pfam Auxin response factor 268 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun9g01580 842 MobiDBLite consensus disorder prediction 376 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01580 Viun-Chr9 23054910 23059924 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01580 1 827 B3 DNA Binding Superfamily AT5G62000 64.542 0.0 1079
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun9g01580 B3 3.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01580 - - gmx:100803498 1543.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01580 9 23054910 23059924 Viun9g01580 9 23054910 23059924 ECH
Viun3g00688 3 4222532 4227357 Viun9g01580 9 23054910 23059924 PCT
Viun9g01580 9 23054910 23059924 Viun3g04289 3 50629100 50631589 PCT