Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01579 ATGGCATCATCCGAGGTGACGATGAAGGGAAATTGCTCGAACCATATCGACGGCGGAGCTGTGGAGGCTCAGGCGCCGGCCACGGCCAAAGACGCAGAAGCTGCACTTTTCAGGGAACTGTGGCACGCGTGTGCCGGTCCTCTCGTGACCGTGCCGCGCGAAGGAGAGCGCGTGTTTTATTTTCCTCAGGGACATATCGAGCAGGTTGAGGCGTCGACGAATCAGGTGGCGGACCAGCACATGCCGGTTTACGATCTCCCACCCAAGATCCTTTGTCGGGTCATCAACGTGCAGCTGAAGGCCGAGCCCGACACGGATGAGGTGTTCGCTCAGGTCACCTTGCTTCCGGAGCCAAATCAAAATGAGAATGACGTGGAGAAAGAACCGCCACCGCCTCCGCCTCCGCGGTTTCACGTTCATTCTTTCTGTAAAACCCTGACAGCGTCCGACACCAGTACCCATGGTGGCTTTTCCGTGCTGAGACGGCATGCTGATGAATGCCTTCCCCCTCTGGATATGTCGAAGCAGCCACCCACTCAGGAATTGGCAGCTAAGGATCTTCATGGAAACGAATGGCGATTTAAACATATCTTTCGGGGTCAGCCCCGTAGACACTTGCTTCAGAGTGGTTGGAGTGTTTTTGTTAGCTCCAAAAGGCTTGTCGCTGGGGATGCGTTTATATTTCTTAGAGGTGAAAACGGGGAACTTCGAGTTGGTGTCAGGCGAGCAATGAGACAACAGGGTAATGTTCCATCCTCAGTGATCTCAAGTCACAGCATGCATCTTGGGGTCCTTGCAACTGCTTGGCATGCCATCTTGACGGGGACAATCTTCACTGTCTATTACAAGCCTAGGACTAGTCCCGCTGAATTTATTGTTCCGTATGACCAATATATGGAGTCTCTCAAAAACAGTTATACCATCGGGATGCGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCAGAGCAGAGGTTTACTGGTACAATTGTTGGAATTGAAGATTCTGATCCCAACAGGTGGAGAGAATCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACACCCCTCGTCCTGAGAGAGTTTCCCCATGGAAAATAGAGCCTGCTCTTGCGCCTCCGGCTCTAAATCCTCTTTCAATGCCCAGGACTAAAAGGCCTCGGTCTAACGCAGTTCCTTCATCTCCAGATTCATCTGTCCTTACTCGAGAAGCAGCATCATCTAAAGTAAGCGTAGACCCTTCACCGGCAAATGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGGTGAAAGCAATGACTCTGATGCTGCTGAGAAATCTGTTGTTTGGCCGCCTGCTGCAGTAGATGATGAAAAGATTGATGCTTCTACGTCAAGGAGGTATGGGACGGAGAGCTGGATGTCAATGGGGAGGAACGAGCCAACATATTCTGATCTTCTTTCAAGCTTTGGGGCCGGAGGGGATCCTTCTCATTCATCCTTGATGGATCAAATGAGCCCTGTAGCTTATCCCACTAGAAAGCAATCGTCGGATCATGAAGGCAAACTTCACATGCCTCAGCCGTGGCCTGTAATGCCCTCCAGTCTTTCATTGAATATATTGGACTCTAATACGAAAGGTCCTGCACATGGTGGTGATCCAACTTACCAAGCTCGAGGGAATTTGAGGTACAGTGCATTTGGTGAATACCCTGCTCTGCATGGTCATAAAGTAGAGCACTCACATGGAAACTTGATGCCACCCCCATCTGCACCCCTAAATCAATATCAAAGTCCTTGTTCAAGAGAAGTTATGTCAAAACCAGTGTCAACAAAAACATTTGAGGCTGTGAAGTTAAAAGATGGTGACTGTAAGCTATTTGGCTTCTCACTTATCAGTGGCCCTATTGTACCAGAGCCTTCTGTATCGCAAAGAAATGTGAACGAACCTACTGGTCAGATGCATCTTACGCCACACCAACAAAGAACATCCGAAAATGATGAGAAGTCAGACCACTCAAAGGGCTCAAAAACTGCTGATGATCAAATTGTTGATGACCATGATAGACCATTACAGACTTCTCAGCTGCATGCGAAAGATGGTCAAGCTAAACCCCTCAGTAGTTCCGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGCATTGCACTCGGTAGGTCAGTGGACCTTACGAAGTACACCGGCTATGATGAATTAGTGGCTGAATTGGATCAGCTGTTTGAATTTGAGGGAGAGTTATTGTCAACTAAAAAAGATTGGCTTATTGTCTATACTGATAATGAGGGTGATATGATGCTTGTAGGCGATGATCCGTGGCAGGAATTCTGTGCCATGGTTCGCAAAATTTACATCTACCCTAAGGAGGAGATCCAGAAAATGAGCCCTGGTACCCTGAGCTCGAAAAATGAAGAGAACCTGTCGGGTAGTGAAGGTGCAGATGCAAAAGATGTTAAACGTCTGCCGCTTCAAAAGTTCAATTATGAAAATTGCCTTGACGCGTGA 2532 0.4814 MASSEVTMKGNCSNHIDGGAVEAQAPATAKDAEAALFRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQNENDVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELAAKDLHGNEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNSYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPNRWRESKWRCLKVRWDETSNTPRPERVSPWKIEPALAPPALNPLSMPRTKRPRSNAVPSSPDSSVLTREAASSKVSVDPSPANGFPRVLQGQEFSTLRGNFGESNDSDAAEKSVVWPPAAVDDEKIDASTSRRYGTESWMSMGRNEPTYSDLLSSFGAGGDPSHSSLMDQMSPVAYPTRKQSSDHEGKLHMPQPWPVMPSSLSLNILDSNTKGPAHGGDPTYQARGNLRYSAFGEYPALHGHKVEHSHGNLMPPPSAPLNQYQSPCSREVMSKPVSTKTFEAVKLKDGDCKLFGFSLISGPIVPEPSVSQRNVNEPTGQMHLTPHQQRTSENDEKSDHSKGSKTADDQIVDDHDRPLQTSQLHAKDGQAKPLSSSARSCTKVHKKGIALGRSVDLTKYTGYDELVAELDQLFEFEGELLSTKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEENLSGSEGADAKDVKRLPLQKFNYENCLDA 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01579 843 Gene3D - 711 804 - -
Viun9g01579 843 MobiDBLite consensus disorder prediction 376 425 - -
Viun9g01579 843 MobiDBLite consensus disorder prediction 642 689 - -
Viun9g01579 843 SUPERFAMILY DNA-binding pseudobarrel domain 138 271 IPR015300 -
Viun9g01579 843 ProSiteProfiles PB1 domain profile. 715 797 IPR000270 GO:0005515
Viun9g01579 843 SMART B3_2 142 244 IPR003340 GO:0003677
Viun9g01579 843 FunFam Auxin response factor 305 377 - -
Viun9g01579 843 Pfam B3 DNA binding domain 142 243 IPR003340 GO:0003677
Viun9g01579 843 MobiDBLite consensus disorder prediction 804 824 - -
Viun9g01579 843 FunFam Auxin response factor 710 804 - -
Viun9g01579 843 Pfam AUX/IAA family 756 802 IPR033389 -
Viun9g01579 843 Gene3D - 305 375 - -
Viun9g01579 843 ProSiteProfiles B3 DNA-binding domain profile. 142 244 IPR003340 GO:0003677
Viun9g01579 843 FunFam Auxin response factor 140 244 - -
Viun9g01579 843 Gene3D - 139 244 IPR015300 -
Viun9g01579 843 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 35 804 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun9g01579 843 CDD B3_DNA 140 242 IPR003340 GO:0003677
Viun9g01579 843 SUPERFAMILY CAD & PB1 domains 715 792 - -
Viun9g01579 843 Pfam Auxin response factor 268 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun9g01579 843 MobiDBLite consensus disorder prediction 642 664 - -
Viun9g01579 843 MobiDBLite consensus disorder prediction 665 689 - -
Viun9g01579 843 MobiDBLite consensus disorder prediction 386 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01579 Viun-Chr9 23054910 23059927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01579 1 828 B3 DNA Binding Superfamily AT5G62000 64.468 0.0 1075
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun9g01579 B3 3.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01579 - - gmx:100803498 1539.24