Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01578 ATGAATGGTACATCAGCAACCACCACCACCATAACAGCCACCACTCCCAAGACATCACCTTCTCCCCCACCTTCCCCGACTCCGACAACCTCCTCCTCCCCGCCGTCGACTCCTCCTCCTCCTGCTCCCCTCCTCCTCCGTCTTCACCAACCTCGACCCTTCCTCCTCCACCTCCACTACTTCCTCCCTCCCAAGGCCCCCACTCTATCGTCACTCCTCAACCCCTTCGACATCCCCTTTCTTGACCCTCAAGCTTCCTCATCCTTCCCGCTTCTTCCCTCTGCCCATTTTCCCTCCGACACGCCTCCTCAGACGGCCACCGCCACCGCCTTCGCCGGCTTCCACAGCCTCGAAGACGGGTCCTCGAAACCTCTCTTTCACCAGCGCTCCAAGATTCTGCGGCCCCTGGAGTCCCTGCCCCCCTCCGGGCGGCACCCACGCTCTTTCAGAAGAGGGCGGCGCTGGAGGAAGAACATGTCTGCCGGGGAAGGGAGTGAGAAGAAGAGGAAGGAGGAGGAGGTGGTGGAGGATGAGTTTGACGGGTCTGGGTTGAACTATGATTCTGATGATTTGACTGAGATTAATAACAACAGTGGTAGGGTGGATGAGGGTAGTGCTAAGAACGGTGGGAACAGTTCCAATGGCAACAGTAGCGTGACTGGGTTGGATCAGAAAGGGAAGAAAAAGGGAATGCCTGCTAAGAATTTGAGCGAACGACGGCGCAGGAAGAAGCTCAATGATAGACTCTACATGCTTAGGTCCGTTGTTCCTAAGATTAGCAAAATGGACAGGGCTTCAATTCTTGGGGATGCAATCGAGTATCTTAAGGAGCTTCTGCAAAGGATCAATGATCTTCATAACGAGTTGGAATCTACACCGCCTGGTTCTTCCCTCACCCCTTCCTCCAATTTCCATCCTTTGACGCCTACTCCTCCCACACTACCCAGTCGTATCAAAGAAGAATTGTGCCCCAGCTCATTGCCAAGCCCCAATGCTCAACCTGCTAGGGTTGAGGTTCGTTTACGCGAAGGAAGGGCTGTTAACATCCACATGTTTTGTGCCCGCAAGCCTGGTCTGTTGCTCTCAACCATGAGGGCTATGGACAACCTTGGATTAGACATTCAGCAGGCTGTTATCAGCTGCTTCAATGGTTTTGCTATGGACATTTTTCGAGCCGAGCAATGCAAAGAAGGTCAGGATGTCCATCCGGAACAGATCAAAGCAGTTCTCTTGGATTCAGCTGGCTATAGTGGCATGATGTAA 1263 0.5344 MNGTSATTTTITATTPKTSPSPPPSPTPTTSSSPPSTPPPPAPLLLRLHQPRPFLLHLHYFLPPKAPTLSSLLNPFDIPFLDPQASSSFPLLPSAHFPSDTPPQTATATAFAGFHSLEDGSSKPLFHQRSKILRPLESLPPSGRHPRSFRRGRRWRKNMSAGEGSEKKRKEEEVVEDVXFDGSGLNYDSDDLTEINNNSGRVDEGSAKNGGNSSNGNSSVTGLDQKGKKKGMPAKNLMXERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPPGSSLTPSSNFHPLTPTPPTLPSRIKEELCPSSLPSPNAQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRAMDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGYSGMM 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01578 422 Gene3D - 225 294 IPR036638 GO:0046983
Viun9g01578 422 MobiDBLite consensus disorder prediction 136 235 - -
Viun9g01578 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 234 298 IPR036638 GO:0046983
Viun9g01578 422 CDD bHLH_AtAMS_like 234 299 - -
Viun9g01578 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 231 280 IPR011598 GO:0046983
Viun9g01578 422 Pfam Helix-loop-helix DNA-binding domain 238 280 IPR011598 GO:0046983
Viun9g01578 422 MobiDBLite consensus disorder prediction 289 332 - -
Viun9g01578 422 FunFam BHLH transcription factor 227 295 - -
Viun9g01578 422 SMART finulus 237 286 IPR011598 GO:0046983
Viun9g01578 422 MobiDBLite consensus disorder prediction 1 46 - -
Viun9g01578 422 Coils Coil 270 294 - -
Viun9g01578 422 MobiDBLite consensus disorder prediction 289 306 - -
Viun9g01578 422 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 120 418 - -
Viun9g01578 422 MobiDBLite consensus disorder prediction 1 16 - -
Viun9g01578 422 MobiDBLite consensus disorder prediction 156 177 - -
Viun9g01578 422 CDD ACT_UUR-ACR-like 351 411 - -
Viun9g01578 422 MobiDBLite consensus disorder prediction 189 224 - -
Viun9g01578 422 MobiDBLite consensus disorder prediction 17 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01578 Viun-Chr9 23051640 23054291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01578 129 395 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 65.074 1.20e-106 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun9g01578 HLH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01578 - - gmx:100217332 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04168 3 49345017 49347226 Viun9g01578 9 23051640 23054291 ECH
Viun9g01578 9 23051640 23054291 Viun9g01578 9 23051640 23054291 ECH
Viun3g00687 3 4218362 4222706 Viun9g01578 9 23051640 23054291 PCT