Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01568 ATGGCATCATACCAGTACCATCCTTTTCCGGTTGATCCTGCATTCTTCCCCAGCAACATGAATACCCCTTCTTCTCCTCCTCCTCTCCAGTTTCACCTCCCTCAGGAAACATCTTTCAATGTCACAAACCAGGATACTAGCTGTGTTGACCAAAGCTCCAAGATCACCATCAGTGACAATGAGCCTTCTGTCACAAAAAACCTTAGCCCTCAGTCCTCTGTGGTGGTGGACAAGCTTGAAACCGGTGAACAGGTCACTCAGAAGGTGAACAACACTCCGGCGTTGAAGAAAAGAAGAACCAGAAATGGATCTTCCTTGACTAGTAACACTCAATCCAAGGATACTGCAACAGAAGGAAGAACCAAGAAACAAAGGAAGAACAATGGTGGGGTGAAAGAAGAGGACAAGGGAAAAGAAGAGAAGAAGGAGCAGAGAAAATGTCCTGAAGAGCCCCCAACAGGCTATATCCACGTCAGAGCAAGAAGGGGTCAGGCAACGGACAGCCACAGCCTTGCTGAGAGGGTGAGAAGAGAGAAGATAAGTGAAAGGATGAAGGTGCTGCAACGGCTTGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTTGAGTTCTTGTCAATGAAGCTTGCTTCCGTGAATCCCATGTTCTATGACTTGTCAACGGACCTAGATACCCTCTTGGTTAGACCAGAGAAACTAAATAGCATGGCATCACCATCACCACTTCCATGTGTGTCACATTGCAACAGCCCTAACCAAGCCACAACTTTTGCTGATACAACCACCATCACCCCCACCAACATCTTTCACAATGCCAGTGATTATCTTTTGGATAATTCAGTTTCTTTTTTTCTTCAAGGCCAGAGGTCAACTATGTTCTCTGAGGAGGATACCGGTAGTCATTTCTGGGACGCAGAGGACCAGCGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATATTCCTTTCATTAA 1029 0.4529 MASYQYHPFPVDPAFFPSNMNTPSSPPPLQFHLPQETSFNVTNQDTSCVDQSSKITISDNEPSVTKNLSPQSSVVVDKLETGEQVTQKVNNTPALKKRRTRNGSSLTSNTQSKDTATEGRTKKQRKNNGGVKEEDKGKEEKKEQRKCPEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYDLSTDLDTLLVRPEKLNSMASPSPLPCVSHCNSPNQATTFADTTTITPTNIFHNASDYLLDNSVSFFLQGQRSTMFSEEDTGSHFWDAEDQRQKFLHPYGFSNNLYSFH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01568 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 231 IPR036638 GO:0046983
Viun9g01568 342 MobiDBLite consensus disorder prediction 79 115 - -
Viun9g01568 342 CDD bHLH_AtBPE_like 154 239 - -
Viun9g01568 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 214 IPR011598 GO:0046983
Viun9g01568 342 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 45 260 IPR024097 GO:0006355
Viun9g01568 342 MobiDBLite consensus disorder prediction 116 154 - -
Viun9g01568 342 SMART finulus 170 220 IPR011598 GO:0046983
Viun9g01568 342 MobiDBLite consensus disorder prediction 52 71 - -
Viun9g01568 342 FunFam Basic helix-loop-helix transcription factor 161 233 - -
Viun9g01568 342 MobiDBLite consensus disorder prediction 79 154 - -
Viun9g01568 342 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983
Viun9g01568 342 Gene3D - 161 234 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01568 Viun-Chr9 22659075 22661912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01568 119 297 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 57.222 6.48e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun9g01568 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01568 - - gmx:100806696 562.762