Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01512 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTGGTGGATGTGGATAAGGCTTCCATACCCAACATAGACTCAATGGAGGAGCATAACAGATTTGGAGTTTATAGAATGGAGGGGGAGTTTTCTGTGGACTTGAAGCTTGGTCATGTGGGGAATTCTGGCACTGAATCACCATTAGCCAAGTCCAAAGATGTTGCTGCTGTTGCTGGAGTCTCCAAAGTGGCTTCCTCACCTTCAGGGTCTTCTAAGAGAGCTAGAGCCATTAACAGCACAACCCTCACTGTGTCATGCCTTGTGGACGGGTGCAATTCTGATCTTAGCAATTGTAGAGACTATCATAGGCGACACAAGGTGTGTGAGCTCCATTCCAAGTCCCCAGAGGTCACAATCGCTGGCCTCAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAGAGAAAAAGAAGCTGCAGAAAGCGTTTAGATGGACACAACAGACGGAGAAGAAAGCCTCAGCCAGAAGCTCACACGCGACCTGGTAGTTTTTTATCGAATTACCAAGATTTTTCAGGTACTCAGTTACTACCCTTCTCAAATCCGCACGTGTATCCTTCGAGTGCCATGATGAGCCCCCCTTGGAGTGGAGGGCTTGTGACTTCCTCTGCAGATGGTAGGTTGCAGAACCAGCACCACCATCAAGTGCACTTGGTCGATAAACAAGAACTTTTTCTAGGATCTTCTCAGAAAGAAGGGAAGCAAGTGGCATTCCTACACGGTAACCATCCCTCCACAGGTGCACTCAGCAACCAAAACCTTCCCTTTCCGTCTCCTTCTGTGTGCCACACGCTTCTCAGGAGCAGCCCTTTATCAGAAAGTTGTGGAGCGAGAAGCAAAATGTTCTGTGAAAGCTTAACAACAACAAATTCGGTGCATGACACTCCTTGTGCTCTCTCTCTTCTGTCATCATCACACACGCACACACCTGGGAATGGTTTGAACCAAATGGTGCAGGCTCCGTCGATGTCCCTGATGCAGCCCTTAGCCCTGAGTCTGCAGGATAACAGCAACTTAGAGTCTGTGGAGCGAGTGTTGGTTCCCAATGGGAGTGACCACTGTTCCTCCATGTATAGCTTGGGTTCTGATGGATCCCACTGCAATGACGCCCCTCAACTGTTTCCCTTTCAATGGGAATAG 1194 0.4849 MDWNLKAPSWDLVDVDKASIPNIDSMEEHNRFGVYRMEGEFSVDLKLGHVGNSGTESPLAKSKDVAAVAGVSKVASSPSGSSKRARAINSTTLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKSPEVTIAGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEAHTRPGSFLSNYQDFSGTQLLPFSNPHVYPSSAMMSPPWSGGLVTSSADGRLQNQHHHQVHLVDKQELFLGSSQKEGKQVAFLHGNHPSTGALSNQNLPFPSPSVCHTLLRSSPLSESCGARSKMFCESLTTTNSVHDTPCALSLLSSSHTHTPGNGLNQMVQAPSMSLMQPLALSLQDNSNLESVERVLVPNGSDHCSSMYSLGSDGSHCNDAPQLFPFQWE 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01512 397 MobiDBLite consensus disorder prediction 158 183 - -
Viun9g01512 397 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 56 384 IPR044817 GO:0003677
Viun9g01512 397 FunFam Squamosa promoter-binding-like protein 14 88 158 - -
Viun9g01512 397 Pfam SBP domain 97 170 IPR004333 GO:0003677
Viun9g01512 397 ProSiteProfiles Zinc finger SBP-type profile. 94 171 IPR004333 GO:0003677
Viun9g01512 397 MobiDBLite consensus disorder prediction 159 173 - -
Viun9g01512 397 SUPERFAMILY SBT domain 95 176 IPR036893 GO:0003677|GO:0005634
Viun9g01512 397 Gene3D - 89 158 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01512 Viun-Chr9 19097170 19100700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01512 1 397 SBP-box Gene Family AT5G50670 39.563 1.79e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun9g01512 SBP 4.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01512 - - gmx:100787407 569.311