Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01511 ATGGAGGAGCATAACAGATTTGGAGTTTATAGAATGGAGGGGGAGTTTTCTGTGGACTTGAAGCTTGGTCATGTGGGGAATTCTGGCACTGAATCACCATTAGCCAAGTCCAAAGATGTTGCTGCTGTTGCTGGAGTCTCCAAAGTGGCTTCCTCACCTTCAGGGTCTTCTAAGAGAGCTAGAGCCATTAACAGCACAACCCTCACTGTGTCATGCCTTGTGGACGGGTGCAATTCTGATCTTAGCAATTGTAGAGACTATCATAGGCGACACAAGGTGTGTGAGCTCCATTCCAAGTCCCCAGAGGTCACAATCGCTGGCCTCAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAGAGAAAAAGAAGCTGCAGAAAGCGTTTAGATGGACACAACAGACGGAGAAGAAAGCCTCAGCCAGAAGCTCACACGCGACCTGGTAGTTTTTTATCGAATTACCAAGATTTTTCAGGTACTCAGTTACTACCCTTCTCAAATCCGCACGTGTATCCTTCGAGTGCCATGATGAGCCCCCCTTGGAGTGGAGGGCTTGTGACTTCCTCTGCAGATGGTAGGTTGCAGAACCAGCACCACCATCAAGTGCACTTGGTCGATAAACAAGAACTTTTTCTAGGATCTTCTCAGAAAGAAGGGAAGCAAGTGGCATTCCTACACGGTAACCATCCCTCCACAGGTGCACTCAGCAACCAAAACCTTCCCTTTCCGTCTCCTTCTGTGTGCCACACGCTTCTCAGGAGCAGCCCTTTATCAGAAAGTTGTGGAGCGAGAAGCAAAATGTTCTGTGAAAGCTTAACAACAACAAATTCGGTGCATGACACTCCTTGTGCTCTCTCTCTTCTGTCATCATCACACACGCACACACCTGGGAATGGTTTGAACCAAATGGTGCAGGCTCCGTCGATGTCCCTGATGCAGCCCTTAGCCCTGAGTCTGCAGGATAACAGCAACTTAGAGTCTGTGGAGCGAGTGTTGGTTCCCAATGGGAGTGACCACTGTTCCTCCATGTATAGCTTGGGTTCTGATGGATCCCACTGCAATGACGCCCCTCAACTGTTTCCCTTTCAATGGGAATAG 1119 0.4879 MEEHNRFGVYRMEGEFSVDLKLGHVGNSGTESPLAKSKDVAAVAGVSKVASSPSGSSKRARAINSTTLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKSPEVTIAGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEAHTRPGSFLSNYQDFSGTQLLPFSNPHVYPSSAMMSPPWSGGLVTSSADGRLQNQHHHQVHLVDKQELFLGSSQKEGKQVAFLHGNHPSTGALSNQNLPFPSPSVCHTLLRSSPLSESCGARSKMFCESLTTTNSVHDTPCALSLLSSSHTHTPGNGLNQMVQAPSMSLMQPLALSLQDNSNLESVERVLVPNGSDHCSSMYSLGSDGSHCNDAPQLFPFQWE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01511 372 MobiDBLite consensus disorder prediction 134 148 - -
Viun9g01511 372 Pfam SBP domain 72 145 IPR004333 GO:0003677
Viun9g01511 372 Gene3D - 64 133 IPR036893 GO:0003677|GO:0005634
Viun9g01511 372 FunFam Squamosa promoter-binding-like protein 14 63 133 - -
Viun9g01511 372 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Viun9g01511 372 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 50 359 IPR044817 GO:0003677
Viun9g01511 372 MobiDBLite consensus disorder prediction 133 158 - -
Viun9g01511 372 SUPERFAMILY SBT domain 70 151 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01511 Viun-Chr9 19096741 19100700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01511 8 372 SBP-box Gene Family AT5G50670 40.106 1.81e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun9g01511 SBP 4.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01511 - - gmx:100787407 534.643