Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01458 ATGAAGATCATATTGGTCATCCCGGCATTGGATTCCAATACACCAATTTTTTCATCTTCCTTTACAAAGGAGCTTATAAACAAACGTTTGAAGGAACATGGTATTTTTGTTCCATCTAGACTCAAAGTATTTAAAATGAGGAAAAAGTTTGTGGCTGGGCCATTTGAAATAGAGCCTATCAGGGTGACCCATTCGATTCCTGATTGTTGTGGATTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAGACACCATTAGATGGGAATGTTTTTGATCGTGAAGCTTTAGAGGAACTCTCTAAAGAGGGAGTAACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGTAGGACAATTAGTGAATCAGTTGTGGCAGATGCATTGTTGCGACATATTTCAGCTTCTAATGGAAGGGTCATCACCACCCAATTTGCATCCAATTTACATCGGCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCCTTAAGGACATATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTGCTAATTGTAACAACAGGTTCTCAAGCAGAACCTCGTGCTGCTTTGAACCTTGCATCGTATGGAAGTAGTCATGCTTTCAAACTAACCAAGGAAGATCTTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAACGAGTCTCGTGTGATGAAAATGCTAAACCGTATATCGGAAATTGGATCAACTATAGTTATGGGAAAAAATGAAGGTCTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAAGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTTCCCATACATGGAGAACTTTTGTTCCTGAAGGAACATGAATTACTGGGAAAATCAACTGGCATTCGGCACACTGCTGTCATTAAGAATGGAGAGATGCTTGGTGTTACACATTTGAGAAATAGAAAAGTCCTTTCTAATGGTTTCATTTCTCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGAGATAGAGCATTTGGCACATCAAATGAACTTTTCATTGATGAAAGATTGAGAATCGCATTAGATGGCATCATTGTTTCTAGCATGGAAATATTTCGCCCCAAAGTTTTAGGTAGTTTGGCTTCAAATACCTTAAAAGGGAAGATAAGGATTACCACAAGATGCTTATGGCTCGACAAAGGAAAGTTGATGGATGCACTCTATAAATCAGCCCATGCTGCTCTTTCAAGCTGCCCTGTAAATAGTCCTCTGGCTCACATAGAAAGAACTGTGTCTGAGGTATTGAGAAAGATGGTGAGGAAGTATAGTGGTAAACGGCCTGAAGTTATTGCCATTGCTATAGAAAATCCTGCATCCACTATTACAGATGAGATAAACGCAAAATTGTCTGGCAAAACCCATGCGGGTCTTGGAATATCAACAGCAAAAAGAGCAGTGGATAGACACGAGAAAGGAAATCAGCCCACCTCACTGCAAATTACAGATGATAGTATTGATAATGCAAGTGGTGCTGAGGGTTATTTATCTGAGGAAGACAACACTGCAAGCGGAGCTGAGGGTGATTTATCCGAATCAGAGGATTCAGATGAGTTTTGGAAACCATTCGTTACACCATTACCTGTCAAGAAGCCTTTGGGTGCTGACAATGCTTATGATGCACAAAAGGAGCATGAGTCCAATCTGAAGAAAGATGATTCTAAGATCATTGATGAAGCAAAGTCTGAAGAAATATCTACTTCTGAACCCAAGTCTTCAAAATCAGTAAAGAGAAATAAATGGAAAACTGATGAAGTTAAGAAGCTGATTGGTATGCGTGAGGAACTACGTGACAGATTTCAAGTTGTGAGGGGAAGGATGGCCCTCTGGGAAGAGATATCTCAAAAATTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAGTGCAAATCTTTGTGGACATCTTTGGTACTTAAATATGAGGGGATCAAGAATGAGAAGGATAGCAAGAAAAGTTGGCCATATATAGAGGACATGGAAAGGATAATGTCTGATAAAGAAGCTCCTGCAACAAAATGA 2172 0.4006 MKIILVIPALDSNTPIFSSSFTKELINKRLKEHGIFVPSRLKVFKMRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGNVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISASNGRVITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLTKEDLVLYSAKVIPGNESRVMKMLNRISEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVTHLRNRKVLSNGFISLGKENLQLKYSDGDRAFGTSNELFIDERLRIALDGIIVSSMEIFRPKVLGSLASNTLKGKIRITTRCLWLDKGKLMDALYKSAHAALSSCPVNSPLAHIERTVSEVLRKMVRKYSGKRPEVIAIAIENPASTITDEINAKLSGKTHAGLGISTAKRAVDRHEKGNQPTSLQITDDSIDNASGAEGYLSEEDNTASGAEGDLSESEDSDEFWKPFVTPLPVKKPLGADNAYDAQKEHESNLKKDDSKIIDEAKSEEISTSEPKSSKSVKRNKWKTDEVKKLIGMREELRDRFQVVRGRMALWEEISQKLLADGISRSPGQCKSLWTSLVLKYEGIKNEKDSKKSWPYIEDMERIMSDKEAPATK 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01458 723 MobiDBLite consensus disorder prediction 524 538 - -
Viun9g01458 723 PANTHER RIBONUCLEASE J 4 723 - -
Viun9g01458 723 CDD GT1 630 695 - -
Viun9g01458 723 Gene3D - 2 148 IPR036866 -
Viun9g01458 723 MobiDBLite consensus disorder prediction 515 568 - -
Viun9g01458 723 MobiDBLite consensus disorder prediction 591 630 - -
Viun9g01458 723 Gene3D - 632 692 - -
Viun9g01458 723 Gene3D - 245 362 IPR036866 -
Viun9g01458 723 ProSiteProfiles Myb-like domain profile. 624 688 IPR001005 -
Viun9g01458 723 SUPERFAMILY Metallo-hydrolase/oxidoreductase 12 343 IPR036866 -
Viun9g01458 723 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 286 323 IPR011108 -
Viun9g01458 723 Pfam Myb/SANT-like DNA-binding domain 629 713 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01458 Viun-Chr9 17402514 17417008 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01458 631 717 Trihelix Transcription Factor Family AT2G38250 33.708 1.66e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Viun9g01458 Myb_DNA-bind_4 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01458 - - gmx:100783850 1264.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01458 9 17402514 17417008 Viun9g01458 9 17402514 17417008 ECH
Viun3g04303 3 50856445 50873621 Viun9g01458 9 17402514 17417008 PCT