Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01450 ATGGGGTTTCATGACTTTGTTTTGCTGTTCTGTTCAGTTTGGTGTGTCTTTTTTGTGGGTAGTTGCAGTGCTGAGTTGCAGTCCTCTCAGACCCAAGTTCTTCTTCAGTTGAAAAAGCACTTGGAGTACCCAAGACTGTTGGAAATTTGGAGAGATCGTTGGACAGATCTTTGCTCTGTTTCTTCTTCTGGGAAAGTGAATGTCACATGCAAGGACAATTTTGTCACTGAGCTCTCCATCTTGGGTGATAAACCAACGGAGGGTAGAGATTTTGATGGGTTTGCCATTCCAAATCAAACACTATCAGATAGCTTCTCCATGGACTCTTTTGTGGCTACTCTGGCAAGGTTAACCAGCCTGAGAGTGCTTAGTCTTGTCTCTTTGGGTATGTGGGGACCACTCCCTGATAGAATTCACAGACTCTATGCACTTCAACATCTGGATTTGAGTTCCAATTATCTTTATGGATCAATCCCTCCTAAGATATGCACAATGGTGAACCTTCAAATTCTTGGATTGGGTGATAACTTCTTCAATGGAACCATCCCAAACTTGTTCAATTCATCAAGCAATCTCTCAGTTCTCAGTTTGAGGAATAACAGGTTGAAGGGTCCATTTCCACCTTCAATCCTTAGTGTCACCTCTTTAAAAGACATTGACATGTCAAGCAATCAAATATCAGGGATGCTGCAAGATTTCAGTGCTTTGAGTGGCTTGGAACAGCTAGATTTAGGAGAAAACAAATTAGAGTCTTTCCTGCCAGCAATGCCAAAAGGGTTGATTACTCTTTTCCTCAGCAGAAATTCCTTCTCAGGTGAAATTCCCAAGCACTATGGTCAACTTAACAGGCTTCAGAAGCTTGATGTTTCCTTCAATGCACTCACTGGCACTGCTCCTGCTGAACTTTTCTCTTTCCCAAACATCAGTTACTTGAATTTGGCTTCCAACATGTTGAATGGACCACTGCAAAGTCACTTAAGATGTAGCAGCCAACTTAGATATGTTGACATATCATACAATAGGTTAGTGGGGGACTTACCTTCTTCACTGAGCACCAGATCAGAGAATAGAGTTGTTAAGAGTGATGGAAACTGTTTATCTGGGAGCGTGCAGAAGCAGCATGCAGTATCCTACTGCACAGAACCTCATGTGAAGAAGAAATCATATAGAGTTGGAATTTTTGTTGGTGTCATTCTAGGAATTCTTTTAATCTCTGTGGTTTTGGCTATGATCATTGTCATAACTTGTAAGAAGTTCTTCCTTCGAGGTGTGTCAGAGCAGCACCTATTGCATAAAACAGTTCAAGATAGCAGCTACGCGGCAGGGTTCTCCTCTGAGCTTGTCACAAATGCAAGGTATATTTCTGAAACTGCAAAGTTAGGCAGAGAGGACCTTCCCACATGTAGGTCATATTCTTTGGAAGAGCTAAAGGAAGCCACAAATAACTTTGATAACTCTACTTTTATGGGTGAAAATATATATGGGAAGCTTTACAGAGGAAAATTGCAGAGTGGGATACAGATTGTAATAAGGTCCCTGCCTGTGTCAAAAAAGTATTCAATTAGAAATTTCAAACTGAGGTTGGATTTGCTTGCAAAGCTCCGTCACCCTCATTTGGTATCCCTTCTTGGTCACTGCATTGATGGTGTTGTAGGAGAGAATAATGAGACAAATGTCTTTCTCATTTATGAATATGTGCCAAATGGGACTTTTCAAACTTATCTCTCTGGAGATAGTTCTGGCAAGGTTTTCAATTGGTCAGAGAGATTATCAGTGCTAATCAACATTGCTAAGGCTGTCCACTTTCTACACACTGGCATGATACCTGGTTTCTTCAAAAATCGACTTAAGAGTGACAATATCTTGCTGAGTGAGAATTGGATGGCAAAGTTAAGTGACTATGGATTGTCCATTATATCAGAAGAAGCTGATGCATGTGGGGTAAATGGAGAAAGTCCTAATTCGTGGCAAATGAAAATGTTAGAAGATGATGTTTATAGCTTTGGATTCATACTACTGGAGGCACTGGTTGGACCTTCAGTATCAGCTAAAAGAGAAGCAGCTGTGTTGAATGTATTGGCATCTTTCAATAGTCAGGATGGATGGAAAGAGATTGTGGACCCCGTTGTGCAAGCTACTTGCTCAAAAGAATCTCTTTTTGTTGTGATTTCCATAACAAATAAATGCATATCTCCTGAGTCATGGAACCGACCATCTATTGAGGATGTCCTTTGGAACCTTCAGTATGCTTCTCAAATTCAGGCAACAGCTGATGGGGATCACAGAATTTGA 2292 0.4088 MGFHDFVLLFCSVWCVFFVGSCSAELQSSQTQVLLQLKKHLEYPRLLEIWRDRWTDLCSVSSSGKVNVTCKDNFVTELSILGDKPTEGRDFDGFAIPNQTLSDSFSMDSFVATLARLTSLRVLSLVSLGMWGPLPDRIHRLYALQHLDLSSNYLYGSIPPKICTMVNLQILGLGDNFFNGTIPNLFNSSSNLSVLSLRNNRLKGPFPPSILSVTSLKDIDMSSNQISGMLQDFSALSGLEQLDLGENKLESFLPAMPKGLITLFLSRNSFSGEIPKHYGQLNRLQKLDVSFNALTGTAPAELFSFPNISYLNLASNMLNGPLQSHLRCSSQLRYVDISYNRLVGDLPSSLSTRSENRVVKSDGNCLSGSVQKQHAVSYCTEPHVKKKSYRVGIFVGVILGILLISVVLAMIIVITCKKFFLRGVSEQHLLHKTVQDSSYAAGFSSELVTNARYISETAKLGREDLPTCRSYSLEELKEATNNFDNSTFMGENIYGKLYRGKLQSGIQIVIRSLPVSKKYSIRNFKLRLDLLAKLRHPHLVSLLGHCIDGVVGENNETNVFLIYEYVPNGTFQTYLSGDSSGKVFNWSERLSVLINIAKAVHFLHTGMIPGFFKNRLKSDNILLSENWMAKLSDYGLSIISEEADACGVNGESPNSWQMKMLEDDVYSFGFILLEALVGPSVSAKREAAVLNVLASFNSQDGWKEIVDPVVQATCSKESLFVVISITNKCISPESWNRPSIEDVLWNLQYASQIQATADGDHRI 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01450 763 Pfam Leucine rich repeat 190 249 IPR001611 GO:0005515
Viun9g01450 763 Pfam Leucine rich repeat 283 342 IPR001611 GO:0005515
Viun9g01450 763 Gene3D Ribonuclease Inhibitor 27 258 IPR032675 -
Viun9g01450 763 Pfam Protein tyrosine and serine/threonine kinase 489 744 IPR001245 GO:0004672|GO:0006468
Viun9g01450 763 Gene3D Transferase(Phosphotransferase) domain 1 566 761 - -
Viun9g01450 763 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 27 258 - -
Viun9g01450 763 SUPERFAMILY L domain-like 114 370 - -
Viun9g01450 763 ProSiteProfiles Protein kinase domain profile. 483 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g01450 763 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 260 384 - -
Viun9g01450 763 SUPERFAMILY Protein kinase-like (PK-like) 466 748 IPR011009 -
Viun9g01450 763 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 446 565 - -
Viun9g01450 763 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 566 763 - -
Viun9g01450 763 SMART LRR_typ_2 281 305 IPR003591 -
Viun9g01450 763 SMART LRR_typ_2 236 259 IPR003591 -
Viun9g01450 763 SMART LRR_typ_2 213 235 IPR003591 -
Viun9g01450 763 SMART LRR_typ_2 141 165 IPR003591 -
Viun9g01450 763 Gene3D Phosphorylase Kinase; domain 1 446 565 - -
Viun9g01450 763 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 99 748 - -
Viun9g01450 763 Gene3D Ribonuclease Inhibitor 259 393 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01450 Viun-Chr9 17132556 17138017 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01450 8 695 Miscellaneous Gene Families AT5G14210 50.071 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Viun9g01450 PK_Tyr_Ser-Thr 3.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01450 - - gmx:100802978 1286.94