Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01423 ATGGGTGGCCAGGAACAAGGAGTTTCTGTTTGTGCTGCCTGCACCCACAACTGTCTTTTGTTCCACCAAACCAAACAAACCTCACCAACCTCTTTCTTCAAGTTCATCACTAGACAAGATTATTTAACAACTTTGTGTATTCCTCCTGCTTTTAGTAGTATTGTGGCCAACATGGTTAATAAGAAAATCAATCTCAATGATTCAAGTGGGCAGCAGTGGAAGGTTAAAATATCAGAAGTTAATGGTTCATTTGTTTTTGGGGAGGGATGGAGTGTTTTTTCATCGGGTCATGGGCTTAAAGTTGGATATCTTTTGGTACTCAATTACATTAAGGATTTGCACTTTGATGTCAAGATCTACGATACTTCTGCCTGTGAAAAGCTTGGTCTTCCTAAAAGAAGAAATCAGAAGAAAAGAAGAAGGGGCAAAATTGGGTCACCTGTTGGAGATAGTATCTTGGTCAGACAAGAACTCAATGCGCCAAGGCAGTGCAGCGAGGTTCACTTAGTAGTACCACAAAATGCTAAAGAGAGTGATCAACATGTGCTCATACCAGATCACAGTGAAGACCCGTGTCATTCAAAAAGCCTAGAATTTGACCAGAGCCATGGGGATGATGGGACCATGAAAAGTGAGAACGGAGATTTAAAAGTTTCTAATGTTGATTATGAATCCAATATAGTTGAAAAGGATGCAATGATATGCAGTAAAGATACTATGCTTGAAGGGGTGTTGAGTACTGAAGTTGCCTTGGATATATCTGAACTTCAAGTATGTGTAAGAAGTGTTTCTCTTGGTGAGGCAGACGCATATACACATGACAAGACTTCTGATTTGGAAATTGAAGAGAACAAAGCCATCTTGTCAAACGCGGAAGCACAAGAGTACCAATTTTTTGAGGACTTAGGTGAAATGATGAAATTGCCTGTGGACATCACTCCCAACTTGGACAGCTCCATGGATGAATTTCATTTCACAGGCGAAGTGTCTAAAAAGTTGAAGAAAGAGCTTATAACTCGCAATGAAATGGAAGCAACAGGGTTGCCGAAGGAAATTAAGGAGGGGCTGTTGGATTCTGACATATTTAATGAATATAATGCGAGTCACTTTAAAACTACTGCACACCTCTCCTGTGTGGTTCCTCATGATAACATTTTCCTTAAATTGCCGTCATGCCTGCCTTTAATTGGCAAGGTAAAGGTAGATCAGCAAAGGAAGATATTAGTATTTCTTCGGGATCCACTGAGGAGATTGTGGCCGGTCTATTATCATGAAAAACCGCATTTGAAATTACTGGCACATGGATGGTTAGATTTTAGCAGAGCTAATAACATTCAGCCAAAAGATGAGTGTATTTTTGAGGCTGAGGAGTGCAACTCTAAACGTATCTTATCTGTTCAGATAGTCCACAACAAGTGA 1419 0.401 MGGQEQGVSVCAACTHNCLLFHQTKQTSPTSFFKFITRQDYLTTLCIPPAFSSIVANMVNKKINLNDSSGQQWKVKISEVNGSFVFGEGWSVFSSGHGLKVGYLLVLNYIKDLHFDVKIYDTSACEKLGLPKRRNQKKRRRGKIGSPVGDSILVRQELNAPRQCSEVHLVVPQNAKESDQHVLIPDHSEDPCHSKSLEFDQSHGDDGTMKSENGDLKVSNVDYESNIVEKDAMICSKDTMLEGVLSTEVALDISELQVCVRSVSLGEADAYTHDKTSDLEIEENKAILSNAEAQEYQFFEDLGEMMKLPVDITPNLDSSMDEFHFTGEVSKKLKKELITRNEMEATGLPKEIKEGLLDSDIFNEYNASHFKTTAHLSCVVPHDNIFLKLPSCLPLIGKVKVDQQRKILVFLRDPLRRLWPVYYHEKPHLKLLAHGWLDFSRANNIQPKDECIFEAEECNSKRILSVQIVHNK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01423 472 Pfam B3 DNA binding domain 32 121 IPR003340 GO:0003677
Viun9g01423 472 Gene3D - 363 472 IPR015300 -
Viun9g01423 472 MobiDBLite consensus disorder prediction 190 212 - -
Viun9g01423 472 CDD B3_DNA 31 121 IPR003340 GO:0003677
Viun9g01423 472 SUPERFAMILY DNA-binding pseudobarrel domain 26 125 IPR015300 -
Viun9g01423 472 MobiDBLite consensus disorder prediction 190 215 - -
Viun9g01423 472 SMART B3_2 32 123 IPR003340 GO:0003677
Viun9g01423 472 SMART B3_2 375 467 IPR003340 GO:0003677
Viun9g01423 472 PANTHER B3 DOMAIN-CONTAINING 25 458 - -
Viun9g01423 472 Gene3D - 23 125 IPR015300 -
Viun9g01423 472 ProSiteProfiles B3 DNA-binding domain profile. 30 123 IPR003340 GO:0003677
Viun9g01423 472 ProSiteProfiles B3 DNA-binding domain profile. 409 472 IPR003340 GO:0003677
Viun9g01423 472 SUPERFAMILY DNA-binding pseudobarrel domain 404 463 IPR015300 -
Viun9g01423 472 CDD B3_DNA 409 466 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01423 22 126 B3 DNA Binding Superfamily AT4G01580 30.357 4.89e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun9g01423 B3 3.4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01423 - - vra:106761496 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01423 9 15697721 15701481 Viun9g01423 9 15697721 15701481 ECH