Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01414 ATGGAGCCCTCTGAATACGAATCAGTTGGTTCCCCCACCAAGGACCCGCTATTAGGTAAACCTTTGTCCCATGTTCGAACACTCGATCACGATCCTCAGCACTCAGATCTCAATCACGTTGCCCAGGATGATGGTGCACTTGGTGGGGAGCTTCAGGACAAGTTGGATTTGAAGGATGAGGGTGAGAGTGAGGATAAAGGTTCGAACTTGGAAGATGGGGGTGGGAAGCTAAGTGATGAAGGTGCTGCACCTGAAAGTGGTAAGGGAGAAGGGAGTGAGGAGGATGGTGGTGGTGGTGATGATGATGATGATTGCAATGGAGGGGACGAGGGGTGTGATTGGATTGAGAATGTGAATGAGAGTGAAAGTGATAAGGTGGGTGGAGATGTTGAGGGAGTAGAGAGCAGGGATGAGAGGAGCAGTGGGATAGCTCAACAGTACCCGTTGAGGCCAGAGGCTGAAGACTGTGCATATTATCTCAAAACTGGAAGTTGCAAATTTGGATTCAATTGCAAGTTCAATCATCCACTTAAGAGGAAAAACCAGGCTAAGAAAGAGAATGCGGGAGAAAAAGAAGAACAGGCAGAAAGATCAGGGCAGACTGAATGCAAGTATTATTTAAGATCTGGTGGGTGTAAGTTTGGGAAGGCTTGTAAGTTTAATCACACAAGGGGAAAGTCTTCATCAGCATCCCCATTTGCAGAGCTTAACTTCCTTGGCCTGCCTATTCGAGTGGGAGAGAAAGAGTGTCACTATTACATGCGTACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACGGCTGGAGGAGGTGATTCTCCTTCTAGATATGGTAATGGAAGTTCTGTTTCATTACAAGGTGTATCACAGTCATCTATATCCTCATGGTCTTCTACTAGACCATTAAATGAATCCACTCCTTTTGTGCCAATGATACTTTCACCTAATCCAGGGGTTTCTCCTCAAAGTTCTGAATGGGATGGATATCAGGCACCTGTCTATCTACCTGAGAGGAATATGCATCTACCTTCAACATATGTCATGAACAACCCAGTTATGGAAACAAATGTTTATATGAATCATCAAAAACAGGTGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTATTTCTTAAAAACGGGGGATTGCAAATTTAAATCTAATTGTAAGTTTCACCATCCAAAGAATCGAATTGCAAGATTGCCTCCATGCAGCCTTAGTGACAAGGGTCTACCTTTGAGACCGGACCAGAATGTTTGCACATATTACAGCCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTCGATCACCCACCACCCTCAACTATGAGTGGACTTGATCAACAATCCTCACACACAGATTCTGCTAGTGTTGATGTGGCTGAAGATGGAGGTGTCAGTGTTGGGAATCAATAG 1455 0.446 MEPSEYESVGSPTKDPLLGKPLSHVRTLDHDPQHSDLNHVAQDDGALGGELQDKLDLKDEGESEDKGSNLEDGGGKLSDEGAAPESGKGEGSEEDGGGGDDDDDCNGGDEGCDWIENVNESESDKVGGDVEGVESRDERSSGIAQQYPLRPEAEDCAYYLKTGSCKFGFNCKFNHPLKRKNQAKKENAGEKEEQAERSGQTECKYYLRSGGCKFGKACKFNHTRGKSSSASPFAELNFLGLPIRVGEKECHYYMRTGSCKFGANCKFNHPDPTAGGGDSPSRYGNGSSVSLQGVSQSSISSWSSTRPLNESTPFVPMILSPNPGVSPQSSEWDGYQAPVYLPERNMHLPSTYVMNNPVMETNVYMNHQKQVQVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCSLSDKGLPLRPDQNVCTYYSRYGICKFGPACKFDHPPPSTMSGLDQQSSHTDSASVDVAEDGGVSVGNQ 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01414 484 ProSiteProfiles Zinc finger C3H1-type profile. 244 272 IPR000571 GO:0046872
Viun9g01414 484 MobiDBLite consensus disorder prediction 95 110 - -
Viun9g01414 484 ProSiteProfiles Zinc finger C3H1-type profile. 197 225 IPR000571 GO:0046872
Viun9g01414 484 SUPERFAMILY CCCH zinc finger 423 450 IPR036855 GO:0046872
Viun9g01414 484 SUPERFAMILY CCCH zinc finger 245 271 IPR036855 GO:0046872
Viun9g01414 484 SUPERFAMILY CCCH zinc finger 200 225 IPR036855 GO:0046872
Viun9g01414 484 Gene3D - 423 470 - -
Viun9g01414 484 Gene3D - 186 274 - -
Viun9g01414 484 ProSiteProfiles Zinc finger C3H1-type profile. 150 178 IPR000571 GO:0046872
Viun9g01414 484 MobiDBLite consensus disorder prediction 455 470 - -
Viun9g01414 484 MobiDBLite consensus disorder prediction 453 484 - -
Viun9g01414 484 MobiDBLite consensus disorder prediction 118 138 - -
Viun9g01414 484 Gene3D - 126 185 - -
Viun9g01414 484 Gene3D - 335 414 - -
Viun9g01414 484 SMART c3hfinal6 425 452 IPR000571 GO:0046872
Viun9g01414 484 SMART c3hfinal6 150 177 IPR000571 GO:0046872
Viun9g01414 484 SMART c3hfinal6 197 224 IPR000571 GO:0046872
Viun9g01414 484 SMART c3hfinal6 246 271 IPR000571 GO:0046872
Viun9g01414 484 SMART c3hfinal6 379 406 IPR000571 GO:0046872
Viun9g01414 484 PANTHER PROTEIN PHOSPHATASE RELATED 72 459 - -
Viun9g01414 484 MobiDBLite consensus disorder prediction 1 146 - -
Viun9g01414 484 MobiDBLite consensus disorder prediction 49 73 - -
Viun9g01414 484 SUPERFAMILY CCCH zinc finger 384 408 IPR036855 GO:0046872
Viun9g01414 484 ProSiteProfiles Zinc finger C3H1-type profile. 425 453 IPR000571 GO:0046872
Viun9g01414 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 154 176 IPR000571 GO:0046872
Viun9g01414 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 247 270 IPR000571 GO:0046872
Viun9g01414 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 200 222 IPR000571 GO:0046872
Viun9g01414 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 381 406 IPR000571 GO:0046872
Viun9g01414 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 428 452 IPR000571 GO:0046872
Viun9g01414 484 MobiDBLite consensus disorder prediction 24 38 - -
Viun9g01414 484 ProSiteProfiles Zinc finger C3H1-type profile. 379 407 IPR000571 GO:0046872
Viun9g01414 484 SUPERFAMILY CCCH zinc finger 149 178 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01414 Viun-Chr9 15502403 15506686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01414 147 467 C2H2 Transcription Factor Family AT3G02830 41.317 3.17e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun9g01414 zf-CCCH 6.8e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01414 - - gmx:100809906 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04328 3 51050705 51055011 Viun9g01414 9 15502403 15506686 ECH
Viun9g01414 9 15502403 15506686 Viun9g01414 9 15502403 15506686 ECH
Viun3g04328 3 51050705 51055011 Viun9g01414 9 15502403 15506686 PCT