Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01412 ATGAGAGCCACGGAGAAGAAATCAGGGATAATGGGAGGGGGTTCGGAGGGGAGCGCCGACGTTTTGCCGTGGCTGAAATCGATGCCGGTGGCCCCGGAGTACCGGCCGACCGCGGCAGAGTTCCAAGATCCAATCGGCTACATATTCAAGATCGAGAAGGAAGCGTCCAAGTACGGCATCTGCAAAATCATTCCTCCCTTCCCTCCTTCTCCCAAGAAAACCGCCATCGCCAACCTCAACCGCTCACTTGCCGTTTCAGGTTCCACATTCACCACGCGCCAGCAACAGATCGGCTTCTGCCCCCGCCGGCCCCGCCCCGTGCAGCGACCTGTCTGGCAGAGCGGTGACCACTATACCTTCACGGAGTTCGAGTCCAAAGCCAAGTCCTTCGAGAAAGCGTACCTCAAACGCCACACCAGAAAAGGTCCGGGCCCAGGCCCAGGCCTGACTCCACTTGAGACTGAAACACTCTTCTGGAAGGCCACGTTGGACAAACCCTTCTCCGTGGAATACGCGAACGACATGCCGGGTTCCGCGTTCTCCCCCAAATGCCGCCACACAGGGGATCCCACCTCCCTTGCGGACACTCCGTGGAACATGCGAGCGGTTTCACGGGCCACGGGTTCACTTTTGCGCTTCATGAAGGAGGAGATTCCGGGCGTTACTTCTCCCATGGTCTATGTTGCCATGCTCTTCAGCTGGTTTGCCTGGCATGTCGAGGACCACGACTTGCATAGCTTGAACTACCTCCACATGGGTGCTGGCAAGACCTGGTACGGCGTCCCTCGAGATGCTGCTGTTGCGTTTGAGGAGGTTGTTAGGGTTCACGGCTACGGGGGAGAGATTAATCCGCTCGTTACATTTGCTATTCTTGGTGAGAAAACCACAGTGATGTCGCCTGAAGTATTTATTAGTGCAGGTGTTCCATGCTGCAGGTTAGTACAAAACGCTGGGGAATTTGTTGTGACGTTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCGAACATTGCTACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCCATTCGGAGGGCTTCACTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGCAAGCATCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAGACTGTAATTAAAGAACTATTTGTCCAAGATGTGTTACAGAACAATGACTTGCTTCATATACTGGGGAAAGGATCCGCTGTAGTACTTCTACCTCGTAGCTCAGTTGACATTTCTATTTGCTCAAAATTACGTGTTGGATCCCAGCAATCCATCAATGTAAGCAATTCTGAGGGAATGCATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTCAACAGGAGTCATGGAATCAAGCAAGAAAAAAGTTTCTATTCTGTGAAAGACAAGTTTAGTACGATGTATGAAAGGAACAGGATTTCCTCTTTTGATGTAAATGGTAACTTAAGCACTTCAAGTACTAAGCCACTTCAAAGGGACACTGAGAGAGAAACTAGTGAAGAAGATGGATTGTCAGATCAGAGACTGTTTTCATGTGTCACTTGTGGAATATTAAGCTTTTCATGTGTTGCTATTGTACAGCCTAGAGATCCAGCTGCTAGATATCTCATGTCAGCTGATTGCAGCTTCTTTAATGATTCGGTTGTTGGTTCTGGAGTATCTAACAGTAAACTTACTACTGCCCCAGAAGAAGCAACTATTCCTGTGCCAAATATGTATACAGGATGGATGAAAAACAATGTCCAAGATGGTATGCAAGATGTTTCTGCTCAATCTTCTCAGTATGCTTTAAGTATTGAAAGTGAAAAGGGCAATACAGCTCTTGCACTATTGGCTTCAGCATATGGAAATTCTTCCGACTCTGAGGAAGATCAGATTTCAGTTGATGGTCATGAAACAAATGTGCTGATCTCTGCTTCAGAAAGTTTACTTTCTCACACTCAAGATTCCCATGCTAGTCCCGTGTCTGCACTTGATACCGGAGATAATATTCCTTTGAGGAGTGCCAGTTGTGAGGGTTTAATGCATGGTAGATTTGAGTGTAATTTAAGTCATCAATCTTTAGACCACCCTTTGAAGAAACAGGATTATAATATCACATCAGGGGTTAGATTTGAAAATATGAAAGTGCCAAATTCCACCTCCAATTGTTCCCAAGATGCCAATGATGCTGAAAGGTCATTTTCTAAAATGTCTATGGTTCCCTTTGATAATAAAAATGCTTCGATGGTGTTACAATCTGATGAAGATTCATCCAGAATGCATGTGTTCTGTCTGGAGCATGCTGCAGAAGCAGAGAAGCAACTTCGCCCAATAGGTGGAGCCCACATATTTCTCCTATGTCATCCAGACTATCCCAAGATAGAGGCTGAAGCAAAAGTGGTGGCAGAAGACTTGGGGATTGATTACACATGTAAGAGTATTGCATACAGGCATGCTTCCAAGGAAGATGAGGAGAGGATTCAATCGGCTCTGGATAGCGAGGAAGCCATTCCTGGGAATGGTGACTGGGCTGTAAAACTAGGGATCAATCTCTTTTACAGTGCACATCTTAGTCGCTCTCCTCTTTATAGCAAGCAGATGCCTTACAATTCTGTTATATATTGTGCATTTGGTTGTAGCTCTCCAGCTAGCTCACCGGAAGAGCCAAAGGTCTATCAAAGAAGGGTCAACAGGCAGAAAAAGGTTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAACCAGGTCCATCCCCTTTTAGCGAAAAGAGATTCTGAAGATGCTGAGGATGAGAAAATCTTACTTGGGTGGATATTACCTGATGAGAGAATTGAGAGATCAGAAAGTACCCCTAAAGGTGAAACTACTAGCAGAAAGTCAGGTAAGAAAAGGAAAATGGCAGCAGAGAATGGACGAACCAGGAAAGGAAGTTATGCTAAGAAAAATGTAGTTTCATATAATTCTACTGAAGATAAACCCAACTCACAGCCAAGGGGGATTCATAGAAGTAAGAAAGCCAGGAATGTTGAGAGAGATCGTGCTGCTTTGAAAGGGGATACTTCTGCGTATCATCATAGAAAACCTATAAGCAAACAAACAAACTGTACTGAAAGTGATGCGGTTTCTGATGATTCACTTGATGATGAAGATGATCACATGCAGCATGGGAGGAATTTTGACATTGACAATGATGTGGTTTCAGATGATACAGGGGACTGTGATTCTGATTGGCAGCAGAGGGAGGAACATAGCAGCAAGGAGGATGAAGATATGGAGGGAGATGCAATTTCAGAGGATTCTTTGGATGTTGGTTCTCTTCAGCTGCAAAGGAAGATTTCTGAAGGCAAGTATGCCAAATGCATTAGTGAAGAAGATATAATTTCTGATGACCAAATGGAGAGTTGTTTCCAAAAGCGGCAGAGAAGAACTCCTAAAAGCAGGCAAGCCAAGTATCTGACTGGAAAAAGTATAATATCCGACAACCAGCTAGATCTGAAAATGCAGAAACAGCAGCGGCAGAATCCTAAAAGCAGGCAAACCAAATACCTCAATGAAGAGGATATTCCGTCAGATGACCAATTGGAGGGCCATTATCGTAGGTATCAAAGAAGGAATCCTAAAGGCAGGCAGGCCAAATGTGTAGCAGAGGAAGATGAAATGTCTGGTGACCAATTGGAGGATCATTGTCAGAAGCTGCAAACAAGTTTCTCTAGGAAAAAGCAAAACAAAGGCATTGATAGAGAAGTTAAATATGTAATGTCTGATGACCAATTGGAGGATCATTTTCCAAAGCAGCAAAGAAGAATTCCTAAGAGCAGGCAAAACAAATACCCTGATAAAGAAGTTATGGATGACTCAGCGGAAAACAATTCTCGTCTGCTGCATAGAACTCCTAAAAGAAAGCAAGCTAAATGCATGGACGAAGATGATTTGAATTCAGATGATGAAATGGAAGATGATCAGAAGCTGAGGAGAACTCTTAGAAGTAAACAATCTAAACCAAAAACACTTCAACAGATGAAACAAGCCAATTCCGTCCATGCAAAAAGCCAGGCATCTCGGTCCATAAAACGGGTATCTCGGGTTCTTGTGAAATCAAAGACTCCTCAGCAAATAAAACCGCGGAATAAGCAATCCACTAACTCCCGAGAGTTTAGTTTACTTATGGAAGACGAGGAAGAAGGTGGACCTAGCACCCGGCTTAGGAAGAGAGCCACAAAAGCTCAGGGGACTGAAGGAAAATTGAAAGAGAAGCAAACAAAGAGGAAGAAGATGAAGAATGATTCAACTGCAAAGGTTTCAGTTGGTCATGTGAAAGGAAAGGATGAGGAAGCAGATTATCAGTGTGATATTGATGGGTGCAGTATGAGCTTTGGGTCAAAACAGGAGCTGCTGCATCACAAGAAAAATATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAGTATCTGGTGCAACACCGAAGAGTTCATGAGGATGAGCGACCCTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAGCACATTCGAGTCCACACTGGTGCACGGCCTTATGTGTGTGCAGAGCCAGGTTGTGGACAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGCCATTCGGCGAAGAAGAGTCGTCAATAG 4782 0.4473 MRATEKKSGIMGGGSEGSADVLPWLKSMPVAPEYRPTAAEFQDPIGYIFKIEKEASKYGICKIIPPFPPSPKKTAIANLNRSLAVSGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDHYTFTEFESKAKSFEKAYLKRHTRKGPGPGPGLTPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRHTGDPTSLADTPWNMRAVSRATGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPASISAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHILGKGSAVVLLPRSSVDISICSKLRVGSQQSINVSNSEGMHSSKGFVSDDLVFNRSHGIKQEKSFYSVKDKFSTMYERNRISSFDVNGNLSTSSTKPLQRDTERETSEEDGLSDQRLFSCVTCGILSFSCVAIVQPRDPAARYLMSADCSFFNDSVVGSGVSNSKLTTAPEEATIPVPNMYTGWMKNNVQDGMQDVSAQSSQYALSIESEKGNTALALLASAYGNSSDSEEDQISVDGHETNVLISASESLLSHTQDSHASPVSALDTGDNIPLRSASCEGLMHGRFECNLSHQSLDHPLKKQDYNITSGVRFENMKVPNSTSNCSQDANDAERSFSKMSMVPFDNKNASMVLQSDEDSSRMHVFCLEHAAEAEKQLRPIGGAHIFLLCHPDYPKIEAEAKVVAEDLGIDYTCKSIAYRHASKEDEERIQSALDSEEAIPGNGDWAVKLGINLFYSAHLSRSPLYSKQMPYNSVIYCAFGCSSPASSPEEPKVYQRRVNRQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDAEDEKILLGWILPDERIERSESTPKGETTSRKSGKKRKMAAENGRTRKGSYAKKNVVSYNSTEDKPNSQPRGIHRSKKARNVERDRAALKGDTSAYHHRKPISKQTNCTESDAVSDDSLDDEDDHMQHGRNFDIDNDVVSDDTGDCDSDWQQREEHSSKEDEDMEGDAISEDSLDVGSLQLQRKISEGKYAKCISEEDIISDDQMESCFQKRQRRTPKSRQAKYLTGKSIISDNQLDLKMQKQQRQNPKSRQTKYLNEEDIPSDDQLEGHYRRYQRRNPKGRQAKCVAEEDEMSGDQLEDHCQKLQTSFSRKKQNKGIDREVKYVMSDDQLEDHFPKQQRRIPKSRQNKYPDKEVMDDSAENNSRLLHRTPKRKQAKCMDEDDLNSDDEMEDDQKLRRTLRSKQSKPKTLQQMKQANSVHAKSQASRSIKRVSRVLVKSKTPQQIKPRNKQSTNSREFSLLMEDEEEGGPSTRLRKRATKAQGTEGKLKEKQTKRKKMKNDSTAKVSVGHVKGKDEEADYQCDIDGCSMSFGSKQELLHHKKNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSRQ 1593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01412 1593 Gene3D Classic Zinc Finger 1528 1557 - -
Viun9g01412 1593 Gene3D Classic Zinc Finger 1498 1527 - -
Viun9g01412 1593 Gene3D Classic Zinc Finger 1558 1592 - -
Viun9g01412 1593 ProSitePatterns Zinc finger C2H2 type domain signature. 1532 1554 IPR013087 -
Viun9g01412 1593 MobiDBLite consensus disorder prediction 1010 1024 - -
Viun9g01412 1593 ProSiteProfiles Zinc finger C2H2 type domain profile. 1530 1559 IPR013087 -
Viun9g01412 1593 FunFam Probable lysine-specific demethylase ELF6 1527 1556 - -
Viun9g01412 1593 MobiDBLite consensus disorder prediction 1284 1338 - -
Viun9g01412 1593 Gene3D Cupin 24 365 - -
Viun9g01412 1593 ProSitePatterns Zinc finger C2H2 type domain signature. 1502 1524 IPR013087 -
Viun9g01412 1593 ProSiteProfiles Zinc finger C2H2 type domain profile. 1500 1529 IPR013087 -
Viun9g01412 1593 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Viun9g01412 1593 MobiDBLite consensus disorder prediction 1078 1094 - -
Viun9g01412 1593 Pfam JmjC domain, hydroxylase 225 343 IPR003347 -
Viun9g01412 1593 SUPERFAMILY beta-beta-alpha zinc fingers 1516 1558 IPR036236 -
Viun9g01412 1593 SMART JmjN_1 30 71 IPR003349 -
Viun9g01412 1593 SMART cupin_9 192 361 IPR003347 -
Viun9g01412 1593 MobiDBLite consensus disorder prediction 1284 1463 - -
Viun9g01412 1593 ProSiteProfiles JmjC domain profile. 192 361 IPR003347 -
Viun9g01412 1593 MobiDBLite consensus disorder prediction 1362 1387 - -
Viun9g01412 1593 ProSitePatterns Zinc finger C2H2 type domain signature. 1562 1586 IPR013087 -
Viun9g01412 1593 FunFam Probable lysine-specific demethylase ELF6 1557 1586 - -
Viun9g01412 1593 MobiDBLite consensus disorder prediction 1416 1463 - -
Viun9g01412 1593 SMART c2h2final6 1477 1499 IPR013087 -
Viun9g01412 1593 SMART c2h2final6 1560 1586 IPR013087 -
Viun9g01412 1593 SMART c2h2final6 1500 1524 IPR013087 -
Viun9g01412 1593 SMART c2h2final6 1530 1554 IPR013087 -
Viun9g01412 1593 MobiDBLite consensus disorder prediction 1209 1231 - -
Viun9g01412 1593 MobiDBLite consensus disorder prediction 1165 1255 - -
Viun9g01412 1593 MobiDBLite consensus disorder prediction 1394 1415 - -
Viun9g01412 1593 FunFam Probable lysine-specific demethylase ELF6 24 365 - -
Viun9g01412 1593 Coils Coil 1438 1458 - -
Viun9g01412 1593 SUPERFAMILY beta-beta-alpha zinc fingers 1548 1582 IPR036236 -
Viun9g01412 1593 MobiDBLite consensus disorder prediction 1179 1208 - -
Viun9g01412 1593 Pfam jmjN domain 32 65 IPR003349 -
Viun9g01412 1593 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 1263 - -
Viun9g01412 1593 MobiDBLite consensus disorder prediction 975 1134 - -
Viun9g01412 1593 MobiDBLite consensus disorder prediction 975 1006 - -
Viun9g01412 1593 MobiDBLite consensus disorder prediction 1025 1062 - -
Viun9g01412 1593 MobiDBLite consensus disorder prediction 1103 1120 - -
Viun9g01412 1593 SUPERFAMILY Clavaminate synthase-like 189 379 - -
Viun9g01412 1593 ProSiteProfiles Zinc finger C2H2 type domain profile. 1560 1591 IPR013087 -
Viun9g01412 1593 MobiDBLite consensus disorder prediction 514 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01412 Viun-Chr9 15396850 15406713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01412 788 889 C2H2 Transcription Factor Family AT5G04240 33.333 7.23e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun9g01412 JmjC 1.2e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01412 - - gmx:100775271 2618.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01412 9 15396850 15406713 Viun9g01412 9 15396850 15406713 ECH