Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01406 ATGATGGAAGGGCGGCGGCATTCAGTTGATATTCCAATTTCTAAAACTCTTGTGGCACTGAGGAGAGTGAGGTCATTGAGGGATCCTTCAACTAATGCTATGAGCAAGCTCTCTTCCTTGGTAGATAATCTGCACTGGGAAAACGGTTCTGCTAATGACATTTCCCTTCGGTTTTCTGATGCTGCTAGGCCATGTGATACTGATGATAATGCTGCTCTCAGATCAAGAAATTTAGGTTTCAAGGGACAAAAGGAGCAGAAAGATGCTGATTCTGCATTCAACTCAAGGCTGAAGCCTAGTGGGATTTCTTGTCAGGTTCTACAACAAGATGGTGAACCAATTTACTCTAAGCGTAATCTGCAATGCATTTCTGGAAACAAATCACCAAGTGAAAGTTGTCGTAGCAACCATGGGGGTAAAGGATTGGACTTGGCTTGTATTGTGCTTCCAAGTAATAATGATTTCAAGGATGGGGATTCATGTTATGTAGCAACTGCTAGATCATCTCAAATAGGGAGAATAGATTGCTCTAAGTCAGCAAAAAAGTCTCTGCGCAAAAATCAAGTAAAACCATCAGAGTTAGTATGCAGTGTTGATGGCAATGTTAGTCCATACCCTTCTGGTTATGATGCTTTCTCACCCTATAGTGGTTCAGTAGGCATAAATCAAGGTAGTGATGGTTTAGATGATAATGATAATGGGTGTGGAATAAGCTGCTGTTGGTCAAAATCACCAAGATTTAGAGAATCAAATCTATATGGTGAGATAGAAGACCGTCCTTTGATATCTCACCGTGTTGATGAGTCAGATCTTCATGCACACAGAAACATGAGAAACAACGGTGGTGGGAGTGGTCTGAATTTGGAAACTCCTAGAAGTTTGTCCATGAAATTTAGGCCTAAAGCATTTAGTGATTTGGTTGGACAAAATGTGGTAGCAAGGTCTCTGTTGGGGGCCATCTCCAGAGGAAGGATAACATCCTTTTATCTGTTCTATGGTCCACGTGGAACCGGCAAGACATCTGCCTCTAGGATATTTGCTGCTGCACTGAATTGTCTTTCTTTTGAGGAACAGAGGCCATGTGGCCTATGCAGAGAATGTATTGTATTCTTTTCTGGAAGAAGTAAAGATTTTAAGGAAGTGGATTCTGTGAGAATCAATCGCAGCGACCAGGTTAAGTCCCTTGTTAAGAGTGCAAGCACCCCTCCAGTCTCCTCACGCTTCAAGGTTTTCATTATTGATGAGTGCCAGCTATTGAATGGGGAAACATGGGCAAGCATTTCAAATAGCTTAGACAACCTTTCTCAACATGTGGTTTTTGTGATGATAACTCCTGATTTGGATAAGCTTCCCCGGAGTGTAGTTTCCCGGGCTCAGAGGTATCACTTTGCAAAGGTTAAAGACGCTGACATTGTATGCAGATTACAAAGTATTTGCGGCGAAGAAGGTCTTGATTTTGAACAGGAAGCTCTAGACTTTATTGCTGCAAAATCTTGTGGATCTGTTAGGGATGCAGAAATGATGCTTGATCAGATGAGTTTGCTTGGTAAAAAGATCAACATCTCTTTAGCTTATGAACTTACTGGGATCGTTTCTGATGATGAATTACTCGATTTGCTGGATCTAGCTTTTTCATCCGACACTTCAAATACTGTCATTAGAGCTCGGGAGCTGATGCGGTCAAGGATAGATCCTTTGCAACTTGTATCACAACTAGCAAATCTCATTATGGACATACTTGCAGGGAAATGTGAAAAGGGTGGTTCAGAAGTCAGAAGTAGATTTCATAGGAAATATACCTCGGAAGCTGATCTGCAGAAACTAAACAATGCATTGAAAATACTTTCTGAAACTGAGAAGCAGCTGAGAATTTCAAAGAATCAAACAACATGGTTCACCGTAGCTCTCCTACAGTTAAGCTCTGTAGATTATCAATCTGTGGATGCAAATGACACCAAATTTAGTATTAGACGTGCATGCAATGGAGGTCAAAACTTGGAGCATTTTGCTAACAAGTCATACAGATTAGGAGTGCCGGAGGATCACAAAGGAACATTGGATTCCATTTGGTATAAAGCCACTGAGATGTGTCATTCTAGTCAGCTCAAAACTTTTCTCAGGAAGAAGGGGAAGTTGTCGTCACTTCATGTTGATCGCAGTACAGCTTGTCTTGCTATTGCCGAGTTAGAGTTCCAACATAGCCACCATGTATCAAAGGCCGAGAAGTCATGGAAAATGATTGCAAGCTCCTTGCAATTCATATTGGGTTGCAATGTGGAGTTGAGGATCACTTATACACCTTGTGCTTCGGATTCTAAGTATTCCAAACTGAAGAGATCAACTTTCAGTATCTTCACTTGTTCCCGCAGAAATCGGCAACAGAAGTCACTATCATCTAATGAACAAGGAAGTGAATCAGATTATGGTGATTGCACCTCTGAGAATCCCATGATGAAAGACAAAACTTCTACCTCTGATTGTGGAATGGATGCTGTAACAGCTTTGAGGAGTTGTGAAGGGAATTTGCTGAGCTCAGGAGAAAGATTTTTTAATAGATCATTTCAAGAGAGTATGAGGACATCATGCGTTGAAGTTGATTCTTCCAAGGATAAGGGTTGCAACGGTGTTCATCTTGATCCATCAATCCTAGATTCAGAAAATGACCACTTTAACTGTTTTCCTAAAACCCTTTGGCTTCAAAAGAAGTTCCGTTCTTCGTATTCATCCAAGTTGTCTTTTCAAGGCATTCAACAGCAGAAAGATTTTGTTTTGTCTGTCCCGAAGTGTACATGTTCTGGGAAATATACCTATGCTAATGAACCCTGCATTTTTTCTGGTAGTTGTAAGAGTTGCACCAAAGCCTCTTAG 2868 0.4104 MMEGRRHSVDIPISKTLVALRRVRSLRDPSTNAMSKLSSLVDNLHWENGSANDISLRFSDAARPCDTDDNAALRSRNLGFKGQKEQKDADSAFNSRLKPSGISCQVLQQDGEPIYSKRNLQCISGNKSPSESCRSNHGGKGLDLACIVLPSNNDFKDGDSCYVATARSSQIGRIDCSKSAKKSLRKNQVKPSELVCSVDGNVSPYPSGYDAFSPYSGSVGINQGSDGLDDNDNGCGISCCWSKSPRFRESNLYGEIEDRPLISHRVDESDLHAHRNMRNNGGGSGLNLETPRSLSMKFRPKAFSDLVGQNVVARSLLGAISRGRITSFYLFYGPRGTGKTSASRIFAAALNCLSFEEQRPCGLCRECIVFFSGRSKDFKEVDSVRINRSDQVKSLVKSASTPPVSSRFKVFIIDECQLLNGETWASISNSLDNLSQHVVFVMITPDLDKLPRSVVSRAQRYHFAKVKDADIVCRLQSICGEEGLDFEQEALDFIAAKSCGSVRDAEMMLDQMSLLGKKINISLAYELTGIVSDDELLDLLDLAFSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCEKGGSEVRSRFHRKYTSEADLQKLNNALKILSETEKQLRISKNQTTWFTVALLQLSSVDYQSVDANDTKFSIRRACNGGQNLEHFANKSYRLGVPEDHKGTLDSIWYKATEMCHSSQLKTFLRKKGKLSSLHVDRSTACLAIAELEFQHSHHVSKAEKSWKMIASSLQFILGCNVELRITYTPCASDSKYSKLKRSTFSIFTCSRRNRQQKSLSSNEQGSESDYGDCTSENPMMKDKTSTSDCGMDAVTALRSCEGNLLSSGERFFNRSFQESMRTSCVEVDSSKDKGCNGVHLDPSILDSENDHFNCFPKTLWLQKKFRSSYSSKLSFQGIQQQKDFVLSVPKCTCSGKYTYANEPCIFSGSCKSCTKAS 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01406 955 Pfam DNA polymerase III, delta subunit 309 466 - -
Viun9g01406 955 CDD HLD_clamp_pol_III_gamma_tau 466 529 IPR045085 -
Viun9g01406 955 Gene3D - 287 464 IPR027417 -
Viun9g01406 955 Gene3D - 530 643 - -
Viun9g01406 955 FunFam DNA polymerase III subunit gamma/tau 467 529 - -
Viun9g01406 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 295 515 IPR027417 -
Viun9g01406 955 Coils Coil 605 628 - -
Viun9g01406 955 MobiDBLite consensus disorder prediction 795 824 - -
Viun9g01406 955 NCBIfam DNA polymerase III subunit gamma/tau 293 639 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Viun9g01406 955 FunFam Protein STICHEL-like 1 isoform C 530 643 - -
Viun9g01406 955 SUPERFAMILY post-AAA+ oligomerization domain-like 530 640 IPR008921 GO:0003677|GO:0006260
Viun9g01406 955 Gene3D - 467 529 - -
Viun9g01406 955 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 294 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01406 Viun-Chr9 15136812 15141833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01406 297 622 Core DNA Replication Machinery Family AT1G21690 25.455 6.49e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01406 - - gmx:100812040 1553.88