Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01400 ATGACAACCACACTCTCTTTGCTTTTCTTCTTCTTCTTCTTCTTTCTCCTCACTCCTATCCTCATTTTCTCTTCACCAGTTCAAAACCCTGAAGAGGTTGTTCAAGAGGTCAACAGGAAAATCAACGCCTCCATAGCTAGGCCTAGGAGGAGCTTGGGCTACCTTTCATGCGGCAGCGGCAACCCCATTGATGACTGTTGGCGGTGCGACCCGAATTGGGAGCAGAACCGGCAAAGGCTAGCGGACTGCGCAATCGGGTTCGGAAAGAACGCCATCGGCGGAAGGGACGGGAAGATCTACGTGGTTGACGACGCCGGCGACGACGACCCGGTGAACCCGAAGCCAGGGACACTCCGCCACGCCGTGATCCAAGACGAGCCACTCTGGATCATCTTCGCGCGCGACATGGTGATCCAGCTAAAGGAGGAGCTTCTGATGAACTCCTTCAAGACAATCGACGGCCGCGGCGCCAGCGTGCACATCGCCGGCGGCCCCTGCATCACCGTGCAGTACGTGACGAACATCATCATCCACGGCATCCACGTGCACGACTGCAAGCAGGGAGGGAACGCCATGGTGCGCGCCTCCCCACGGCACTACGGGTGGAGAACCGTGTCGGACGGCGACGGTGTGTCCATCTTCGGAGGAAGCCACGTGTGGGTCGACCATTGCTCCTTGTCGAACTGCAACGACGGGTTGATCGACGCCATCCATGGGTCCACCGCCATCACCATCTCCAACAATTACATGACGCATCATGACAAGGTCATGCTCTTAGGTCACAGTGACTCCTACACTCAGGACAAGGACATGCAAGTCACTATTGCTTTCAACCACTTCGGTGAAGGTCTTGTTCAAAGGATGCCAAGGTGTAGGCTTGGGTATTTCCATGTTGTGAACAATGATTATACTCACTGGGAAATGTATGCCATTGGAGGGAGTGCTAATCCAACCATCAACAGCCAAGGCAACAGATTTGTTGCACCAGATGACAGATTTAGCAAAGAGGTGACAAAACGTGAAGATGCGGCAGAGAGTGAATGGCAGAGTTGGAATTGGAGATCAGAAGGGGATTTGTTAGTAAATGGTGCATTTTTTACTGCTTCTGGTGCTGGAGCTTCCTCAAGTTATGCAAGGGCTTCAAGCCTAAGTGCGAGACCATCTTCACTTGTTGGTTCCATTACAACAGGTGCTGGTGCACTCACCTGCAAGAAAGGTTCTCCTTGCTGA 1230 0.5325 MTTTLSLLFFFFFFFLLTPILIFSSPVQNPEEVVQEVNRKINASIARPRRSLGYLSCGSGNPIDDCWRCDPNWEQNRQRLADCAIGFGKNAIGGRDGKIYVVDDAGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIQLKEELLMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGIHVHDCKQGGNAMVRASPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKREDAAESEWQSWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGALTCKKGSPC 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01400 409 PANTHER PECTATE LYASE 18-RELATED 27 407 IPR045032 GO:0030570
Viun9g01400 409 FunFam Pectate lyase 60 402 - -
Viun9g01400 409 SMART amb_all 135 332 IPR002022 -
Viun9g01400 409 Gene3D - 60 402 IPR012334 -
Viun9g01400 409 PRINTS Pollen allergen Amb family signature 143 159 IPR018082 -
Viun9g01400 409 PRINTS Pollen allergen Amb family signature 107 132 IPR018082 -
Viun9g01400 409 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Viun9g01400 409 PRINTS Pollen allergen Amb family signature 351 375 IPR018082 -
Viun9g01400 409 PRINTS Pollen allergen Amb family signature 207 228 IPR018082 -
Viun9g01400 409 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Viun9g01400 409 PRINTS Pollen allergen Amb family signature 83 100 IPR018082 -
Viun9g01400 409 PRINTS Pollen allergen Amb family signature 380 403 IPR018082 -
Viun9g01400 409 SUPERFAMILY Pectin lyase-like 51 403 IPR011050 -
Viun9g01400 409 Pfam Pectate lyase 147 326 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01400 Viun-Chr9 14918570 14921170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01400 6 409 Polysaccharide Lyase AT5G63180 80.147 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01400 K01728 - gmx:100814679 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01400 9 14918570 14921170 Viun9g01400 9 14918570 14921170 ECH
Viun3g04332 3 51115324 51117490 Viun9g01400 9 14918570 14921170 ECH
Viun1g03397 1 41181253 41183453 Viun9g01400 9 14918570 14921170 ECH
Viun9g01400 9 14918570 14921170 Viun3g04332 3 51115324 51117490 ECH
Viun3g04332 3 51115324 51117490 Viun9g01400 9 14918570 14921170 PCT