LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g01400	ATGACAACCACACTCTCTTTGCTTTTCTTCTTCTTCTTCTTCTTTCTCCTCACTCCTATCCTCATTTTCTCTTCACCAGTTCAAAACCCTGAAGAGGTTGTTCAAGAGGTCAACAGGAAAATCAACGCCTCCATAGCTAGGCCTAGGAGGAGCTTGGGCTACCTTTCATGCGGCAGCGGCAACCCCATTGATGACTGTTGGCGGTGCGACCCGAATTGGGAGCAGAACCGGCAAAGGCTAGCGGACTGCGCAATCGGGTTCGGAAAGAACGCCATCGGCGGAAGGGACGGGAAGATCTACGTGGTTGACGACGCCGGCGACGACGACCCGGTGAACCCGAAGCCAGGGACACTCCGCCACGCCGTGATCCAAGACGAGCCACTCTGGATCATCTTCGCGCGCGACATGGTGATCCAGCTAAAGGAGGAGCTTCTGATGAACTCCTTCAAGACAATCGACGGCCGCGGCGCCAGCGTGCACATCGCCGGCGGCCCCTGCATCACCGTGCAGTACGTGACGAACATCATCATCCACGGCATCCACGTGCACGACTGCAAGCAGGGAGGGAACGCCATGGTGCGCGCCTCCCCACGGCACTACGGGTGGAGAACCGTGTCGGACGGCGACGGTGTGTCCATCTTCGGAGGAAGCCACGTGTGGGTCGACCATTGCTCCTTGTCGAACTGCAACGACGGGTTGATCGACGCCATCCATGGGTCCACCGCCATCACCATCTCCAACAATTACATGACGCATCATGACAAGGTCATGCTCTTAGGTCACAGTGACTCCTACACTCAGGACAAGGACATGCAAGTCACTATTGCTTTCAACCACTTCGGTGAAGGTCTTGTTCAAAGGATGCCAAGGTGTAGGCTTGGGTATTTCCATGTTGTGAACAATGATTATACTCACTGGGAAATGTATGCCATTGGAGGGAGTGCTAATCCAACCATCAACAGCCAAGGCAACAGATTTGTTGCACCAGATGACAGATTTAGCAAAGAGGTGACAAAACGTGAAGATGCGGCAGAGAGTGAATGGCAGAGTTGGAATTGGAGATCAGAAGGGGATTTGTTAGTAAATGGTGCATTTTTTACTGCTTCTGGTGCTGGAGCTTCCTCAAGTTATGCAAGGGCTTCAAGCCTAAGTGCGAGACCATCTTCACTTGTTGGTTCCATTACAACAGGTGCTGGTGCACTCACCTGCAAGAAAGGTTCTCCTTGCTGA	1230	0.5325	MTTTLSLLFFFFFFFLLTPILIFSSPVQNPEEVVQEVNRKINASIARPRRSLGYLSCGSGNPIDDCWRCDPNWEQNRQRLADCAIGFGKNAIGGRDGKIYVVDDAGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIQLKEELLMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGIHVHDCKQGGNAMVRASPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKREDAAESEWQSWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTGAGALTCKKGSPC	409

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Viun9g01400	409	PANTHER	PECTATE LYASE 18-RELATED	27	407	IPR045032	GO:0030570
Viun9g01400	409	FunFam	Pectate lyase	60	402	-	-
Viun9g01400	409	SMART	amb_all	135	332	IPR002022	-
Viun9g01400	409	Gene3D	-	60	402	IPR012334	-
Viun9g01400	409	PRINTS	Pollen allergen Amb family signature	143	159	IPR018082	-
Viun9g01400	409	PRINTS	Pollen allergen Amb family signature	107	132	IPR018082	-
Viun9g01400	409	PRINTS	Pollen allergen Amb family signature	287	306	IPR018082	-
Viun9g01400	409	PRINTS	Pollen allergen Amb family signature	351	375	IPR018082	-
Viun9g01400	409	PRINTS	Pollen allergen Amb family signature	207	228	IPR018082	-
Viun9g01400	409	PRINTS	Pollen allergen Amb family signature	309	328	IPR018082	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g01400	Viun-Chr9	14918570	14921170	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun9g01400	6	409	Polysaccharide Lyase	AT5G63180	80.147	0.0	662

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g01400	K01728		-	gmx:100814679	746.503

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Viun9g01400	9	14918570	14921170	Viun9g01400	9	14918570	14921170	ECH
Viun3g04332	3	51115324	51117490	Viun9g01400	9	14918570	14921170	ECH
Viun1g03397	1	41181253	41183453	Viun9g01400	9	14918570	14921170	ECH
Viun9g01400	9	14918570	14921170	Viun3g04332	3	51115324	51117490	ECH
Viun3g04332	3	51115324	51117490	Viun9g01400	9	14918570	14921170	PCT

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