Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01389 ATGTCTATCACTGCCACTGCGTTCAAGTCTCTCACCATGGCCGATTCGTGCCTCCTCTCTTCTCCCTCCTCGCTCTTCCACAACATAACCAAACCCCACGTTTTCTCACCTCCTTCCAAACCCCTCACACTCCAATTCTCATGCCTCAATTCCTCGCCCTCGCTCTCTCTCTCCCTCGCTGCACGAACCCACCGTTCCCCCGTCCTCACCCACGTCGCCCAAACCTCCGATTGGGCCCAGCAAGGAGACAACACCGCCACCTTCCAGGCCCAAGAGGAAGACCAAGAAGAGGGTGGCCTCCTCGATTGGCAGCCCGAGGGTGAAGGCACGGAAGATGAGGGTTTCGTGGAACCGCCTGAAGAGGCCAAACTCTTCGTCGGTAACTTGCCTTACGACGTTGATAGCCAGAAATTGGCCATGCTATTCGAACAAGCCGGAGTCGTGGAAATCGCCGAGGTGATTTATGCCAGGGACACTGACCGGAGTCGTGGATTTGGATTTGTGACGATGAGTACTGTTGAAGAAGCTGAGAAAGCTGTGGAGAAATTCAATAGCTATGATTATGATGGAAGATTGTTGACTGTTAATAAGGCTTCTCCGAGAGGAGCTCAACCTGAACGCCGACCTCGTCGTAACTTTGAGCCTGCCTTTTCTGTCTATGTTGGTAATTTGCCGTGGGATGTTGATGGCACCAGGTTGGAGCAAGTTTTCAGCGAGCATGGTAAGGTTTTGAGTGCTAGGGTAGTGTATGACAGGGAGAGTGGTCGTTCACGTGGCTTTGGCTTTGTGACAATGTCGGATGAGTCAGAAATGAATGATGCTGTTGCTGCTCTTGATGGGCAGACTTTGGACGGAAGGACAATTAGGGTGAATGTTGCTGAGGACAGACCCCCCAGGCGTAGCTCCTTTTGA 912 0.5241 MSITATAFKSLTMADSCLLSSPSSLFHNITKPHVFSPPSKPLTLQFSCLNSSPSLSLSLAARTHRSPVLTHVAQTSDWAQQGDNTATFQAQEEDQEEGGLLDWQPEGEGTEDEGFVEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGVVEIAEVIYARDTDRSRGFGFVTMSTVEEAEKAVEKFNSYDYDGRLLTVNKASPRGAQPERRPRRNFEPAFSVYVGNLPWDVDGTRLEQVFSEHGKVLSARVVYDRESGRSRGFGFVTMSDESEMNDAVAALDGQTLDGRTIRVNVAEDRPPRRSSF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01389 303 CDD RRM2_NsCP33_like 219 293 - -
Viun9g01389 303 MobiDBLite consensus disorder prediction 89 115 - -
Viun9g01389 303 MobiDBLite consensus disorder prediction 95 115 - -
Viun9g01389 303 FunFam 31 kDa ribonucleoprotein, chloroplastic 206 302 - -
Viun9g01389 303 SMART rrm1_1 123 196 IPR000504 GO:0003723
Viun9g01389 303 SMART rrm1_1 218 291 IPR000504 GO:0003723
Viun9g01389 303 SUPERFAMILY RNA-binding domain, RBD 209 301 IPR035979 GO:0003676
Viun9g01389 303 SUPERFAMILY RNA-binding domain, RBD 118 211 IPR035979 GO:0003676
Viun9g01389 303 PANTHER OS02G0815200 PROTEIN 29 300 - -
Viun9g01389 303 Gene3D - 206 302 IPR012677 -
Viun9g01389 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Viun9g01389 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 289 IPR000504 GO:0003723
Viun9g01389 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 193 IPR000504 GO:0003723
Viun9g01389 303 Gene3D - 71 205 IPR012677 -
Viun9g01389 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 295 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01389 Viun-Chr9 14547354 14549682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01389 122 300 Eukaryotic Initiation Factors Gene Family AT3G16380 31.285 6.58e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01389 - - gmx:100810381 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04342 3 51232141 51234908 Viun9g01389 9 14547354 14549682 ECH
Viun9g01389 9 14547354 14549682 Viun9g01389 9 14547354 14549682 ECH
Viun3g04342 3 51232141 51234908 Viun9g01389 9 14547354 14549682 PCT