Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01360 ATGCCGCCGGATTCCTCCGAGCAGGACCTCGACGATCCTGACATGGAATTCGTCGAGGTTGATCCCTCTGGTCGTTATGGTCGGTACAAGGAAGTTTTAGGGAAAGGGGCTTTCAAGAAAGTATATCGTGCGTTTGATGAATTGGAAGGTATTGAAGTGGCTTGGAATCAGATTAAGCTGGCGGATGTGTTGCGTAACTCTGAAGATTTCGAGCGACTTTATTCGGAGGTTCATTTACTCAAGACTCTGAAGCATAAGAATATAATTAAGTTTTATAACTCATGGATTGACTCCAAGAGCGAGAACATCAACTTCATCACTGAAATTTTCACCTCAGGAACGTTGCGCCAATACCGGAAGAAACATAAGCATGTTGATTTGAGAGCTGTGAAGAAATGGTCTAAGCAGATTCTGGAAGGCCTTTACTATCTTCACAGTAATAATCCTCCGATCATTCATCGTGACCTGAAGTGTGATAACATTTTCGTCAATGGGAATCAAGGGGAGGTAAAAATTGGTGATTTAGGATTGGCGGCTATCCTCCAGCAGGCCAATTCAGCTCACAGTGTCATAGGAACTCCGGAGTTCATGGCCCCAGAACTTTACGAAGAGGAATACAACGAGCTTGTAGACATCTATGCTTTTGGTATGTGCTTGTTAGAGTTGGTAACAGTTGAGTACCCGTATGTTGAATGTGCCAATGCCGCTCAAATATACAAGAAAGTGACATCTGGAATAAAGCCAGCATCATTGGCAAAAGTGACAGATCCTGATGTTAAAGCATTTATTGAAAAGTGTATTGCTAATGTCTCTGAACGGTTGTCTGCGAAGGACCTCTTGTTGGATCCCTTCCTTCAGTCAGATTATGATAATGAAAGTGTAGCCCGATCTTCAAAAGCTCAAACCCATCATTTAGCAAATATTTCTCATAATCAAGCTATTGTTGTGGATACTTCTACTGACGCAAGTAGGGAATTCACGGTGGAAGGTCAGAGGAGAGATAATAATACAATATTTTTAAAATTGAGAATTGCAGATTCCTCAGGTCATATTCGCAATATCCACTTTCCTTTTGATATCGAAGCAGACACTTCAACCTCTGTTGCCAGTGAAATGGTTGAGGAGTTGGAACTAACTGATCAAGATGTTACAACTATTGCTAGGATGATTGACTCTGAAATTCGGTTTCACATTCCTAGTTGGAACGTCAGTGAAATTCCTGTTGACTGTTATAGTCAAGATTCAGACTATACCTCTGAAAGTAGGCCAGAGGCCTCTCCTATGAAACACGATTCCGTTAGTTCCCCTGGCAGTCTTGCATTAGAAATATTACCTTCAGGTCGAAAGTTCTGGTCAGACTCACCAAGGGGAGTTGGTGGAAACTCTCCATTTCGTGCTGGTACTTCAAAATTTTTTTCTCCTGCAGATGCAAACGCTGACGAAGGCAGCCTGGCCGCGAATGGTGATATTTCAGCTGATGATCGTGTTGGTGATTTTTGTGAAGAGATTGTTGATTCCCCTTCCAGTGAGAAAAGTATCAAATCAGGAGCAACCAGTGAAAAATCTGCTGTGAACGAAATATCTGGAAGCGTGAAAGATTCGGAAGCAGAATACATCAATCTCATAGCAACAAAACTGGAGAGCTTGTTGGTTAAACAAAGAGAGGAGTTAGATGAACTAAAGAGGAAGCACGAATTAGCTGTTTCAGATCTTTTGAAGGAACTTTCTCCAGAAATTAGCCAGAAGGTTCTAAATATATGCAACCTACAGATGCATGGCGGTGAAGTGCAGGGAGAAGCTCGCCCTTCATTCATCTAA 1818 0.4202 MPPDSSEQDLDDPDMEFVEVDPSGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQIKLADVLRNSEDFERLYSEVHLLKTLKHKNIIKFYNSWIDSKSENINFITEIFTSGTLRQYRKKHKHVDLRAVKKWSKQILEGLYYLHSNNPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECANAAQIYKKVTSGIKPASLAKVTDPDVKAFIEKCIANVSERLSAKDLLLDPFLQSDYDNESVARSSKAQTHHLANISHNQAIVVDTSTDASREFTVEGQRRDNNTIFLKLRIADSSGHIRNIHFPFDIEADTSTSVASEMVEELELTDQDVTTIARMIDSEIRFHIPSWNVSEIPVDCYSQDSDYTSESRPEASPMKHDSVSSPGSLALEILPSGRKFWSDSPRGVGGNSPFRAGTSKFFSPADANADEGSLAANGDISADDRVGDFCEEIVDSPSSEKSIKSGATSEKSAVNEISGSVKDSEAEYINLIATKLESLLVKQREELDELKRKHELAVSDLLKELSPEISQKVLNICNLQMHGGEVQGEARPSFI 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01360 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Viun9g01360 605 SUPERFAMILY Protein kinase-like (PK-like) 29 336 IPR011009 -
Viun9g01360 605 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 505 - -
Viun9g01360 605 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g01360 605 CDD STKc_WNK 25 285 - -
Viun9g01360 605 FunFam Probable serine/threonine-protein kinase WNK1 12 108 - -
Viun9g01360 605 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
Viun9g01360 605 MobiDBLite consensus disorder prediction 413 437 - -
Viun9g01360 605 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Viun9g01360 605 FunFam Probable serine/threonine-protein kinase WNK3 336 427 - -
Viun9g01360 605 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g01360 605 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Viun9g01360 605 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 340 394 IPR024678 GO:0004674|GO:0005524
Viun9g01360 605 Coils Coil 543 574 - -
Viun9g01360 605 Gene3D - 336 418 - -
Viun9g01360 605 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01360 Viun-Chr9 13828472 13832567 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01360 102 584 MAP Kinase Kinase Kinase AT3G48260 55.556 8.96e-169 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Viun9g01360 Pkinase 1.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01360 K08867 - gmx:100301899 905.59