Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01359 ATGGCACTTTCTTCTGCAACTGCTTCCTCCAAACTCATACTCTTCCCACATGCATCATCATCTTCTTCTTCTTCACCCACTTCTCTAAATTCTACACCCTTCCGCTCCACCACCACCACCACCACCCATAAACCAACCACTCTCTCTTCCTCCTTCCTCCAGCCCTCCACCATCCTCCGCCGCACACCCTCCACCACAACCCACCGCCGCCAATTCACCGTCCGTGCCGCGCGCGGCAAGTTTGAGCGCAAGAAGCCCCACGTCAACATAGGCACCATCGGCCACGTCGACCACGGCAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCGCCCTCGGCAACAGCGCCCCCAAGAAGTACGACGAGATCGACGCCGCCCCGGAGGAGCGCGCCCGCGGCATCACCATCAACACCGCCACCGTGGAATACGAAACTGAAAACCGCCACTACGCTCACGTGGACTGCCCCGGCCACGCGGACTACGTCAAGAACATGATCACCGGCGCCGCCCAGATGGACGGCGCCATCCTGGTGGTGTCCGGCGCCGACGGCCCCATGCCCCAAACGAAAGAACACATCTTGTTGGCAAAACAAGTCGGCGTGCCCAACATGGTGGTGTTCCTGAACAAACAGGACCAAGTCGACGACGAAGAACTCCTCCAGTTGGTGGAATTGGAAGTGCGCGAGCTTCTCTCGTCGTACGAGTTCCCCGGCGACGACATCCCCATCGTCTCGGGCTCCGCACTCTTGGCTCTGGAAGCTCTCATGGAGAACCCTGCAATCAAACGCGGCGACAACGAATGGGTGGATAAAATCTACCAACTGATGGACGAAGTGGACAACTACATTCCCATTCCGCAGCGCCAAACCGAACTCCCTTTCCTTCTGGCCGTGGAAGACGTTTTCACAATCACCGGGCGTGGGACGGTGGCAACGGGGCGAGTGGAGCGTGGGACGATAAAAGTTGGCGACACCGTTGACCTTGTGGGTTTGAGGGAAACGAGGAACACGACGGTGACAGGCGTGGAGATGTTCCAGAAGATTCTTGACGAGGCGTTGGCGGGGGACAACGTGGGGCTGCTGCTCAGAGGGATTCAGAAGATGGACATTCAGAGAGGGATGGTTCTGGCAAAGCCTGGCACCATTACGCCCCACACGAAGTTCGAGGCCATTGTTTATGTTCTGAAGAAGGAGGAAGGTGGGAGACACTCGCCGTTCTTTGCAGGGTACAGGCCTCAGTTTTACATGAGAACCACCGACGTGACGGGGAAGGTGACCGGCATCATGAACGACAAGGACGAGGAGTCCAAGATGGTTATGCCCGGTGACCGTGTTAAGATGGTCGTCGAGCTCATTGTTCCTGTCGCCTGCGAACAGGGAATGAGGTTCGCCATTAGGGAAGGAGGCAAGACCGTTGGTGCTGGTGTTATCCAATCCATCATCGAGTGA 1455 0.5787 MALSSATASSKLILFPHASSSSSSSPTSLNSTPFRSTTTTTTHKPTTLSSSFLQPSTILRRTPSTTTHRRQFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDIPIVSGSALLALEALMENPAIKRGDNEWVDKIYQLMDEVDNYIPIPQRQTELPFLLAVEDVFTITGRGTVATGRVERGTIKVGDTVDLVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKMDIQRGMVLAKPGTITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTGIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01359 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 311 IPR027417 -
Viun9g01359 484 Pfam Elongation factor Tu domain 2 310 378 IPR004161 GO:0005525
Viun9g01359 484 Gene3D - 77 288 IPR027417 -
Viun9g01359 484 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 126 141 IPR031157 -
Viun9g01359 484 CDD EFTU_II 296 382 IPR033720 -
Viun9g01359 484 FunFam Elongation factor Tu 76 288 - -
Viun9g01359 484 CDD EFTU_III 385 479 - -
Viun9g01359 484 NCBIfam small GTP-binding protein domain 88 220 IPR005225 GO:0005525
Viun9g01359 484 Pfam Elongation factor Tu GTP binding domain 85 286 IPR000795 GO:0003924|GO:0005525
Viun9g01359 484 Pfam Elongation factor Tu C-terminal domain 383 482 IPR004160 -
Viun9g01359 484 Gene3D Translation factors 423 483 - -
Viun9g01359 484 Hamap Elongation factor Tu [tuf]. 76 484 IPR004541 GO:0003746|GO:0005525|GO:0006414
Viun9g01359 484 MobiDBLite consensus disorder prediction 17 69 - -
Viun9g01359 484 SUPERFAMILY Translation proteins 290 386 IPR009000 -
Viun9g01359 484 Gene3D Translation factors 291 419 - -
Viun9g01359 484 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 85 289 IPR000795 GO:0003924|GO:0005525
Viun9g01359 484 PANTHER ELONGATION FACTOR TU-RELATED 23 483 - -
Viun9g01359 484 NCBIfam elongation factor Tu 77 484 IPR004541 GO:0003746|GO:0005525|GO:0006414
Viun9g01359 484 FunFam Elongation factor Tu 291 419 - -
Viun9g01359 484 PRINTS GTP-binding elongation factor signature 89 102 IPR000795 GO:0003924|GO:0005525
Viun9g01359 484 PRINTS GTP-binding elongation factor signature 133 141 IPR000795 GO:0003924|GO:0005525
Viun9g01359 484 PRINTS GTP-binding elongation factor signature 169 180 IPR000795 GO:0003924|GO:0005525
Viun9g01359 484 PRINTS GTP-binding elongation factor signature 206 215 IPR000795 GO:0003924|GO:0005525
Viun9g01359 484 PRINTS GTP-binding elongation factor signature 153 163 IPR000795 GO:0003924|GO:0005525
Viun9g01359 484 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 383 483 IPR009001 -
Viun9g01359 484 FunFam Elongation factor Tu 423 483 - -
Viun9g01359 484 CDD EF_Tu 86 288 IPR041709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01359 Viun-Chr9 13824669 13826475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01359 83 482 Eukaryotic Initiation Factors Gene Family AT5G60390 29.306 6.58e-45 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01359 K02358 - gmx:100793431 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01359 9 13824669 13826475 Viun9g01359 9 13824669 13826475 ECH
Viun3g04365 3 51398778 51400634 Viun9g01359 9 13824669 13826475 PCT