Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01355 ATGAGTGCTCCCATGGACACAGAGCTCACAACCTACGAAAATGGCGCTGGTTCCCAACACTTACTTCCCGAGGACAAAGTTCTTGTCCCTGTCGAGGTAACCCTAAAACCTTCCAGCACCGCTAAAATCGAAGATGTTCGTTCCGCGGTTGAAGGGATGCTTGAAAAGAGGAGTTTGAGCTATATCGATGGACCCATTCCGGTGCCTCTTGATGAGGCGTTTCTCGCAGATAACGTGCAAAGAATTTGCGTCTGCGGATGTGATTCTGATGAAGGGAGGCATAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCTATTGTACATGTTTTTCAGCTTAGCGAGGAAGGTCCATGTGAAGATATAAGCTCTGATGGCCAGTCTTCCAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATACGAATCTGGTCTAAAGCAACGGTTATTACGTTATGCAGCAAGTGCTTTGCTCTTTACTGAAAAAGGGGTTGACCCATTCCTTGTTTCATGGAACCGCATAATTCTGTTACATGGACCTCCTGGGACAGGAAAGACATCTTTATGTAAAGCATTAGCTCAGAAATTAGCAATTCGATTCAATTCAAGATACCCTCAGTCGCAGCTTATTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTAGCAAAACTTTTCCAGAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTCGTATTTGTATTGATTGATGAAGTCGAAAGCCTTGCTGCTGCTAGAAAAGCTGCCCTATCTGGTTCTGAACCTTCTGATTCTATTCGGGTTGTCAATGCATTACTAACTCAGATGGACAAGTTAAAATCATCTCCTAATGTGATAATTCTTACAACTTCCAACATAACTGCAGCTATTGACATTGCTTTTGTTGATCGAGCTGATATCAAAGCATACGTTGGTCCCCCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCCTGCTTGCAGGAACTGATACGTACAGGGATCTTGACTACTTTCCAGGATTGCAAGAATATCATGCTTCCAAATTACGCTTGTGCAAAGGAGAGGTTGAACGCTCCAGATTTGCGCGAGGGTGCTGCATTCATGCAACTGTGCAAGCACCTGTTGGAAACCGCAGAGGCATGTGAGGGAATGAGTGGAAGGTCTTTGAGAAAGCTTCCATTTTTGGCACATGCTGCACTCTCAAATCCTTTTGATTGCAACGCTATTAAGTTCTTATGTACAATGGTAGAAACAGCAAAGAGGGAGCGTTCTGAGCTTCCTGATTAA 1341 0.431 MSAPMDTELTTYENGAGSQHLLPEDKVLVPVEVTLKPSSTAKIEDVRSAVEGMLEKRSLSYIDGPIPVPLDEAFLADNVQRICVCGCDSDEGRHNDNVLLFWQVKPIVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLAIRFNSRYPQSQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGILTTFQDCKNIMLPNYACAKERLNAPDLREGAAFMQLCKHLLETAEACEGMSGRSLRKLPFLAHAALSNPFDCNAIKFLCTMVETAKRERSELPD 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01355 446 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 184 202 IPR001270 GO:0005524
Viun9g01355 446 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 298 312 IPR001270 GO:0005524
Viun9g01355 446 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 23 443 IPR044539 -
Viun9g01355 446 Gene3D - 123 347 IPR027417 -
Viun9g01355 446 Pfam ATPase family associated with various cellular activities (AAA) 184 329 IPR003959 GO:0005524|GO:0016887
Viun9g01355 446 FunFam pachytene checkpoint protein 2 homolog 124 346 - -
Viun9g01355 446 SMART AAA_5 180 332 IPR003593 GO:0016887
Viun9g01355 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 413 IPR027417 -
Viun9g01355 446 CDD RecA-like_Pch2-like 130 328 - -
Viun9g01355 446 ProSitePatterns AAA-protein family signature. 302 321 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01355 Viun-Chr9 13682312 13688420 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01355 184 398 Calmodulin-binding Proteins AT3G56690 28.182 3.53e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01355 K22399 - gmx:100795009 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01355 9 13682312 13688420 Viun9g01355 9 13682312 13688420 ECH