LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g01348	ATGTTGTCTAGAGTGCAACATAAGAACTTGGTGAAGTTTATTGGTGCTTGTAAGGAGCCAGTAATGGTGATAGTCACTGAGCTGCTATTAGGAGGAACATTGCGTAAGTATTTGCTTAACATGCGTCCCAAATGCTTGGATAGACATGTTGCCATTGGTTTTGCACTTGATATAGCACGTGCTATGGAGTGCCTGCATTCCCATGGGATCATCCACCGTGATCTTAAACCTGATAACTTGCTGTTGACTGAAGACCAGAAAACAGTGAAGCTAGCAGATTTTGGTTTAGCAAGAGAAGAGTCATTAACCGAGATGATGACCGCTGAAACAGGAACTTATCGCTGGATGGCTCCAGAGTTGTATAGTACTGTCACACTGAGGCAAGGGGAGAAAAAGCATTACAACCATAAAGTTGATGCTTATAGTTTTGCAATTGTGTTGTGGGAGCTCTTACACAACAAAGTTCCTTTTGAAGGCATGTCAAACCTTCAGGCAGCATATGCTGCAGCCTTTAAGAATGTAAGGCCAAGTGCAGAGAATCTTCCTGAGGAATTGGCTCTAATTCTTACTTCATGCTGGCAAGAGGACCCAAATGCCAGACCCAACTTCACCCAGATAATCCAAATGCTCCTAAATTATCTTTACACTGTTGCACCTCCTGAACCCATGATTCCTTCAAGAATATTCACTTCTGAGAACACTGTGTTGCCACCAGAGTCTCCCGGAACTAGCTCCTTAATGGCAAAACGTGATGACACAGGCGATACACCAAGAGCAAAGGACGAAGTCAAGCCTAATGGTTTTCTTTGCTGCTTTAGTCAGTGTTATTAA	831	0.432	MLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPKCLDRHVAIGFALDIARAMECLHSHGIIHRDLKPDNLLLTEDQKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKVPFEGMSNLQAAYAAAFKNVRPSAENLPEELALILTSCWQEDPNARPNFTQIIQMLLNYLYTVAPPEPMIPSRIFTSENTVLPPESPGTSSLMAKRDDTGDTPRAKDEVKPNGFLCCFSQCY	276

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g01348	276	SMART	serkin_6	1	214	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun9g01348	276	ProSiteProfiles	Protein kinase domain profile.	1	214	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun9g01348	276	CDD	STKc_MAP3K-like	1	210	-	-
	Viun9g01348	276	PANTHER	SERINE-THREONINE PROTEIN KINASE	1	221	-	-
	Viun9g01348	276	MobiDBLite	consensus disorder prediction	234	260	-	-
	Viun9g01348	276	MobiDBLite	consensus disorder prediction	234	250	-	-
	Viun9g01348	276	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	70	82	IPR008271	GO:0004672\|GO:0006468
	Viun9g01348	276	Gene3D	Transferase(Phosphotransferase) domain 1	1	221	-	-
	Viun9g01348	276	Pfam	Protein tyrosine and serine/threonine kinase	1	210	IPR001245	GO:0004672\|GO:0006468
	Viun9g01348	276	PRINTS	Tyrosine kinase catalytic domain signature	26	39	IPR001245	GO:0004672\|GO:0006468
	Viun9g01348	276	PRINTS	Tyrosine kinase catalytic domain signature	64	82	IPR001245	GO:0004672\|GO:0006468
	Viun9g01348	276	PRINTS	Tyrosine kinase catalytic domain signature	181	203	IPR001245	GO:0004672\|GO:0006468
	Viun9g01348	276	PRINTS	Tyrosine kinase catalytic domain signature	138	160	IPR001245	GO:0004672\|GO:0006468
	Viun9g01348	276	FunFam	serine/threonine-protein kinase HT1	31	231	-	-
	Viun9g01348	276	SUPERFAMILY	Protein kinase-like (PK-like)	1	238	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g01348	Viun-Chr9	13519342	13522086	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun9g01348	1	276	MAP Kinase Kinase Kinase	AT5G50180	83.333	9.14e-174	481

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Viun9g01348		PK_Tyr_Ser-Thr	2.2e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g01348	-		-	gmx:100796593	554.288