Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01326 ATGATGAAAACATTTGATGTTGAGGCTGGCTATTTTCCATCAAAGCGTTCAGACAAATGGTTAAATGTCAAGCGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCGATTGGTGCTTGGCGAGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTGTGGCGTGTTTCAATCCTGAAACAGAGGAGTATCAAAGCGTATGTCGTGTGATGTCTGGTTTTTCAGATTCATTTTATATAGAGGTCAGGAACTTAAGGATAGGGGCCATGCTTAGAACTGTTTTGCCTGCATGGGCTCATGCTGTTGCTATGAATTCTAGCCCTACTTTTCACCAAGGAAGAACTGCAGAAAATTTGAAGGAGAAACTTCAGGTTCTTTCTATGGAAGTTGTTGAAGCATATAACATACTGCCAAATCTGGATCTAATAGTTCCATCTCTCATGAACAAAGGCATTGATTTTTTGGTTTCAAGTTTATCAATGGTTCCAGGCATCCCTATTAAGCCTATGCTAGCAAAGATCACCAATGGTATTCCTCAAGCACTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGGGCTCAAATTCATAAATTAGTTGATGGATCAATTTGTGTTTTTTCAAGAAATGGGGATGAAACAACTTCAAGATTTCCTGATCTGATTGACATAATCAAGGAATCCAGCAAGCCTGTTGCATCAACTTTCGTAATGGATGCGGAAGTTGTTGGTATTGACAGGAAAAATGGATGCAGGATTATGTCTTTCCAGGAGCTATCATCACGTGGGAGAGGTGGAAAAGATGCATTAGTTACTGCAGAGAGCATCAAGGTGGATATATGCATCTTTGTTTTTGATATCATGTTCGCAAATGGAGAGCAGTAA 918 0.3889 MMKTFDVEAGYFPSKRSDKWLNVKRDYVEGLNDTLDLVPIGAWRGNGRKAGWYSPFLVACFNPETEEYQSVCRVMSGFSDSFYIEVRNLRIGAMLRTVLPAWAHAVAMNSSPTFHQGRTAENLKEKLQVLSMEVVEAYNILPNLDLIVPSLMNKGIDFLVSSLSMVPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSICVFSRNGDETTSRFPDLIDIIKESSKPVASTFVMDAEVVGIDRKNGCRIMSFQELSSRGRGGKDALVTAESIKVDICIFVFDIMFANGEQ 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01326 305 Gene3D - 1 29 - -
Viun9g01326 305 FunFam DNA ligase 202 305 - -
Viun9g01326 305 Pfam ATP dependent DNA ligase domain 173 304 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Viun9g01326 305 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 197 205 IPR016059 GO:0003909
Viun9g01326 305 Gene3D - 30 133 IPR012340 -
Viun9g01326 305 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 87 305 - -
Viun9g01326 305 SUPERFAMILY Nucleic acid-binding proteins 33 96 IPR012340 -
Viun9g01326 305 ProSiteProfiles ATP-dependent DNA ligase family profile. 1 62 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Viun9g01326 305 Coils Coil 120 140 - -
Viun9g01326 305 Gene3D DNA ligase/mRNA capping enzyme 170 305 - -
Viun9g01326 305 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 129 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01326 Viun-Chr9 12886518 12896206 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01326 1 85 Core DNA Replication Machinery Family AT1G08130 45.882 3.37e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01326 - - vun:114163952 614.379