Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01282 ATGGCATCATCGAGCTCCTACAATTCTCCATGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCCTTTCAGGGTGCATCTTTGCACCTTACTTCCCACCAGAAGAGCCTCAGAAGTTCGCGAACGTGCACAAGATATTCGGAGCGAGCAATGTGACGAAGCTTCTGAACGAGCTTCTTCCACACCAGAGGGAAGATGCAGTGAACTCGCTTGCCTATGAAGCTGAGGCACGTGTGAGAGACCCAGTTTATGGGTGCGTAGGAGCCATCTCTTTTCTGCAGAGACAAGTTCAAAGGCTCCAAAAGGAGCTTGATTCTGCCAATGCCGATCTCCTTCGCTATGCCTACAATGACATGCCTCCACCCTCTCTTTCGGTGCCACCACCAATGACACCAACAACAATTCAACAAATGCCCCCCCAAAGGTCTTTGATCAGTGCAAGGTTTGGAAATGAAGCAAGTGGGTTTTATAGGCCCTCTCCAACCATCACTCACAACTCTTACCCTTATTCTCTTCCATGGACTGATACCCCTCCTGAAGATATCGATGGGGGAGGAGAAGGAGGAGGTAATAACAACTTGTGA 582 0.4914 MASSSSYNSPCAACKFLRRKCLSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYAYNDMPPPSLSVPPPMTPTTIQQMPPQRSLISARFGNEASGFYRPSPTITHNSYPYSLPWTDTPPEDIDGGGEGGGNNNL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01282 193 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Viun9g01282 193 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 133 - -
Viun9g01282 193 MobiDBLite consensus disorder prediction 171 193 - -
Viun9g01282 193 Coils Coil 89 116 - -
Viun9g01282 193 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01282 Viun-Chr9 12727202 12729577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01282 1 184 AS2 family AT5G63090 65.079 3.63e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun9g01282 LOB 1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01282 - - gmx:100803667 286.574