Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01261 ATGTTGGTCTCCGATTTTATAGCGCGTTGCCTTCATCTTGAGGAGGCTTCTGCTGTTCAGTGTAATAGTGAAACTTGTGCAAGTAATGGTGCCTCTGTCTCTGTACCGTATTTGAAGGATTGGCATTTTGTAAAGGAGTATCCTGAATATGTTGCATATGACACTCCAAGGTTCTTTTGTGATGACTGGATCAATCTGTATCTTGACAACTTCAGAATCCATATTGATTCTGACGCACAGCAACCAAATGAGGAAATATGTTGCTCTGACTATCGATTTGTTTACATAGGGGTGAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCCTATAGCTGGTCGTCAAATGTCTGTGGAAAGAAGAGATGGCTTTTTCTAGATCCTTCCCAGTGTCATCTTATATTTGACAGGAATATGAAAAATTGTGTATATAATATCTTTGATGAAGTATCAAACTCGAAGTTTCCTGGTTTTAGCAAGGCTATCTGGTTGGAATGCACACAAGATGCTGGTGAAATTATATTTGTACCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAACTGGTTCAACGCTTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTATGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTTACATTCATGTCATACTTCACCTTGGCCAACTTGGTGTTGCTTCGTTATATAAATAGAAGATATGTAAGTACTACTGGAAGTTCATCAACAATAGCTCAGCATTTATCCATGAATCTTGGGTGTTTAAGGAAGATCGTTTCAGAGATGAAACACGTACGTGCTCTAGAAGGAAATCATAATTGCGTTGTGGATATTATCAAAGCATTTGAAGATCCTAGATTTTCCAAATTATGCATGCATGTAGGAAGAACATATGTCATGGTACATGAGCAATCTCACTTGGCCTCTGATTTCGAGAGCACTACAATGAGTGATTTGGTGGACTTCAATGATTCGAAATCATACACATCTCAGATCTACACACCTGAAGATCTCATTAAATTTATAGACAATGTAGTTGCAGAAGAGGAGCCATCTGCACTTCGTGTTGCTTGA 1194 0.3853 MLVSDFIARCLHLEEASAVQCNSETCASNGASVSVPYLKDWHFVKEYPEYVAYDTPRFFCDDWINLYLDNFRIHIDSDAQQPNEEICCSDYRFVYIGVKGSWTPLHADVFRSYSWSSNVCGKKRWLFLDPSQCHLIFDRNMKNCVYNIFDEVSNSKFPGFSKAIWLECTQDAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFMSYFTLANLVLLRYINRRYVSTTGSSSTIAQHLSMNLGCLRKIVSEMKHVRALEGNHNCVVDIIKAFEDPRFSKLCMHVGRTYVMVHEQSHLASDFESTTMSDLVDFNDSKSYTSQIYTPEDLIKFIDNVVAEEEPSALRVA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01261 397 SMART cupin_9 36 216 IPR003347 -
Viun9g01261 397 Gene3D Cupin 1 201 - -
Viun9g01261 397 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 4 268 - -
Viun9g01261 397 SUPERFAMILY Clavaminate synthase-like 35 228 - -
Viun9g01261 397 ProSiteProfiles JmjC domain profile. 44 216 IPR003347 -
Viun9g01261 397 Pfam JmjC domain, hydroxylase 94 199 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01261 Viun-Chr9 12255706 12260037 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01261 37 208 Glycosyltransferase AT1G78280 27.473 2.63e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun9g01261 JmjC 2.5e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01261 - - gmx:100803814 733.791