Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01260 ATGGGTATCAATATAAAGGGAGAAATAGAGAGGGTAAACGGGAAGGAACTGAGTTACAGTGAATTTGTGGAGAGATATATGGAGAAGAACAAACCCGTAGTGCTCACCGGCCTAATGGACCCTTGGAGAGCTCACACTGATTGGGTCACACTTCATTCCCAACCCAATTTTCAATTTTTCTCCACTCATTTTGGAGCTTCTAAAGTTCAGGTTGCTGATTGTGACACCAGAGAATTTACTGATCAGAAAAGAGAGGAGATGTTGGTCTCCGATTTTATAGCGCGTTGCCTTCATCTTGAGGAGGCTTCTGCTGTTCAGTGTAATAGTGAAACTTGTGCAAGTAATGGTGCCTCTGTCTCTGTACCGTATTTGAAGGATTGGCATTTTGTAAAGGAGTATCCTGAATATGTTGCATATGACACTCCAAGGTTCTTTTGTGATGACTGGATCAATCTGTATCTTGACAACTTCAGAATCCATATTGATTCTGACGCACAGCAACCAAATGAGGAAATATGTTGCTCTGACTATCGATTTGTTTACATAGGGGTGAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCCTATAGCTGGTCGTCAAATGTCTGTGGAAAGAAGAGATGGCTTTTTCTAGATCCTTCCCAGTGTCATCTTATATTTGACAGGAATATGAAAAATTGTGTATATAATATCTTTGATGAAGTATCAAACTCGAAGTTTCCTGGTTTTAGCAAGGCTATCTGGTTGGAATGCACACAAGATGCTGGTGAAATTATATTTGTACCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAACTGGTTCAACGCTTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTATGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTTACATTCATGTCATACTTCACCTTGGCCAACTTGGTGTTGCTTCGTTATATAAATAGAAGATATGTAAGTACTACTGGAAGTTCATCAACAATAGCTCAGCATTTATCCATGAATCTTGGGTGTTTAAGGAAGATCGTTTCAGAGATGAAACACGTACGTGCTCTAGAAGGAAATCATAATTGCGTTGTGGATATTATCAAAGCATTTGAAGATCCTAGATTTTCCAAATTATGCATGCATGTAGGAAGAACATATGTCATGGTACATGAGCAATCTCACTTGGCCTCTGATTTCGAGAGCACTACAATGAGTGATTTGGTGGACTTCAATGATTCGAAATCATACACATCTCAGATCTACACACCTGAAGATCTCATTAAATTTATAGACAATGTAGTTGCAGAAGAGGAGCCATCTGCACTTCGTGTTGCTTGA 1452 0.3926 MGINIKGEIERVNGKELSYSEFVERYMEKNKPVVLTGLMDPWRAHTDWVTLHSQPNFQFFSTHFGASKVQVADCDTREFTDQKREEMLVSDFIARCLHLEEASAVQCNSETCASNGASVSVPYLKDWHFVKEYPEYVAYDTPRFFCDDWINLYLDNFRIHIDSDAQQPNEEICCSDYRFVYIGVKGSWTPLHADVFRSYSWSSNVCGKKRWLFLDPSQCHLIFDRNMKNCVYNIFDEVSNSKFPGFSKAIWLECTQDAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFMSYFTLANLVLLRYINRRYVSTTGSSSTIAQHLSMNLGCLRKIVSEMKHVRALEGNHNCVVDIIKAFEDPRFSKLCMHVGRTYVMVHEQSHLASDFESTTMSDLVDFNDSKSYTSQIYTPEDLIKFIDNVVAEEEPSALRVA 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01260 483 Gene3D Cupin 3 286 - -
Viun9g01260 483 ProSiteProfiles JmjC domain profile. 130 302 IPR003347 -
Viun9g01260 483 SMART cupin_9 122 302 IPR003347 -
Viun9g01260 483 Pfam Cupin-like domain 21 285 IPR041667 -
Viun9g01260 483 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 10 339 - -
Viun9g01260 483 SUPERFAMILY Clavaminate synthase-like 6 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01260 Viun-Chr9 12255706 12260411 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01260 7 294 Glycosyltransferase AT1G78280 24.832 9.97e-18 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun9g01260 Cupin_8 1.6e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01260 - - gmx:100803814 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01260 9 12255706 12260411 Viun9g01260 9 12255706 12260411 ECH