Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01259 ATGGGTATCAATATAAAGGGAGAAATAGAGAGGGTAAACGGGAAGGAACTGAGTTACAGTGAATTTGTGGAGAGATATATGGAGAAGAACAAACCCGTAGTGCTCACCGGCCTAATGGACCCTTGGAGAGCTCACACTGATTGGGTCACACTTCATTCCCAACCCAATTTTCAATTTTTCTCCACTCATTTTGGAGCTTCTAAAGTTCAGGTTGCTGATTGTGACACCAGAGAATTTACTGATCAGAAAAGAGAGGAGATGTTGGTCTCCGATTTTATAGCGCGTTGCCTTCATCTTGAGGAGGCTTCTGCTGTTCAGTGTAATAGTGAAACTTGTGCAAGTAATGGTGCCTCTGTCTCTGTACCGTATTTGAAGGATTGGCATTTTGTAAAGGAGTATCCTGAATATGTTGCATATGACACTCCAAGGTTCTTTTGTGATGACTGGATCAATCTGTATCTTGACAACTTCAGAATCCATATTGATTCTGACGCACAGCAACCAAATGAGGAAATATGTTGCTCTGACTATCGATTTGTTTACATAGGGGTGAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCCTATAGCTGGTCGTCAAATGTCTGTGGAAAGAAGAGATGGCTTTTTCTAGATCCTTCCCAGTGTCATCTTATATTTGACAGGAATATGAAAAATTGTGTATATAATATCTTTGATGAAGTATCAAACTCGAAGTTTCCTGGTTTTAGCAAGGCTATCTGGTTGGAATGCACACAAGATGCTGGTGAAATTATATTTGTACCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAACTGGTTCAACGCTTATAACCTTTCTTGGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTATGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTTACATTCATGTCATACTTCACCTTGGCCAACTTGGTGTTGCTTCGTTATATAAATAGAAGATATGTAAGTACTACTGGAAGTTCATCAACAATAGCTCAGCATTTATCCATGAATCTTGGGTGTTTAAGGAAGATCGTTTCAGAGATGAAACACGTACGTGCTCTAGAAGGAAATCATAATTGCGTTGTGGATATTATCAAAGCATTTGAAGATCCTAGATTTTCCAAATTATGCATGCATGTAGGAAGAACATATGTCATGGTACATGAGCAATCTCACTTGGCCTCTGATTTCGAGAGCACTACAATGAGTGATTTGGTGGACTTCAATGATTCGAAATCATACACATCTCAGATCTACACACCTGAAGATCTCATTAAATTTATAGACAATGTAGTTGCAGAAGAGGAGCCATCTGCACTTCGTGTTGCTTGA 1449 0.392 MGINIKGEIERVNGKELSYSEFVERYMEKNKPVVLTGLMDPWRAHTDWVTLHSQPNFQFFSTHFGASKVQVADCDTREFTDQKREEMLVSDFIARCLHLEEASAVQCNSETCASNGASVSVPYLKDWHFVKEYPEYVAYDTPRFFCDDWINLYLDNFRIHIDSDAQQPNEEICCSDYRFVYIGVKGSWTPLHADVFRSYSWSSNVCGKKRWLFLDPSQCHLIFDRNMKNCVYNIFDEVSNSKFPGFSKAIWLECTQDAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFMSYFTLANLVLLRYINRRYVSTTGSSSTIAQHLSMNLGCLRKIVSEMKHVRALEGNHNCVVDIIKAFEDPRFSKLCMHVGRTYVMVHEQSHLASDFESTTMSDLVDFNDSKSYTSQIYTPEDLIKFIDNVVAEEEPSALRVA 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01259 482 ProSiteProfiles JmjC domain profile. 130 302 IPR003347 -
Viun9g01259 482 SMART cupin_9 122 301 IPR003347 -
Viun9g01259 482 Gene3D Cupin 3 286 - -
Viun9g01259 482 SUPERFAMILY Clavaminate synthase-like 6 303 - -
Viun9g01259 482 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 10 338 - -
Viun9g01259 482 Pfam Cupin-like domain 21 285 IPR041667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01259 Viun-Chr9 12255706 12260411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01259 7 292 Glycosyltransferase AT1G78280 24.662 2.71e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun9g01259 Cupin_8 1.3e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01259 - - gmx:100803814 883.248