Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01244 ATGGAGAACAGCCTCCACAACTTTTACTATTCAGCAACTTACTCAGACCAGTCAACAACAATGGCTCCACCTCCGCCGACTAAGGTTGTCTTTGGAAAGGAAGAGGATGTTTCAAAAGCACTTCGTAATAAAGTTGCTTCTCACCCTCTATTTCCTCACCTCCTCCATGCCTTCATCGATTGCCACAAGGTAGGAGCACCACAAGATATTGCAGACCTATTTGAAGGAATCAAAGAAGAGCATAGTGGGTTGTGTCAGATATCTGAATCTAAATCTTATCATGGCTTCTTGGGTGCTGATCCCGAACTTGATGATTTCATGGGAACGTTTTACGATTTATTGGTGAAGTACAAATCAGATCTTTCAAGACCCTTTAACGAGGCAACCATGTTCCTCACGCATATGGAAACTCAGCTTCACTCCATCTGCAACGATCTTGCAGTCTCAGACAACACTGTTCCTCAACCTGCAGGTGACTTTGGTGGATCACGTGGGAAAGATAGTATGGAGGGGATTAAGAGAATTGAAAGCAAGAAGACAAATGAAGTTGAAGAGCTGAAGGATAATCTTCTAAGTAGATATAGTGGTTACATTACTAATCTGAAGCATGAATTTTCCAGAAAGAAGAAGAAAGAAAAGCTACCAAAAGAAGCAAAGAAAATCTTACTTGCATGGTGGAATATTCACTTTAAATGGCCATACCCAACGGATGCTGATAAGGTAGCCCTAGCTGAATGGAGTGGTTTGGAGCAGAAGCAAGTAAATAATTGGTTTATAAACCAAAGGAAACGCCATTGGAAAGCATCAGAAGAAATGCAGGTTGCAATTTTGGATGAACTCTATGGACCCTTGCACGAGTGA 861 0.4158 MENSLHNFYYSATYSDQSTTMAPPPPTKVVFGKEEDVSKALRNKVASHPLFPHLLHAFIDCHKVGAPQDIADLFEGIKEEHSGLCQISESKSYHGFLGADPELDDFMGTFYDLLVKYKSDLSRPFNEATMFLTHMETQLHSICNDLAVSDNTVPQPAGDFGGSRGKDSMEGIKRIESKKTNEVEELKDNLLSRYSGYITNLKHEFSRKKKKEKLPKEAKKILLAWWNIHFKWPYPTDADKVALAEWSGLEQKQVNNWFINQRKRHWKASEEMQVAILDELYGPLHE 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01244 286 Pfam ELK domain 185 206 IPR005539 GO:0003677
Viun9g01244 286 CDD homeodomain 221 267 IPR001356 GO:0003677
Viun9g01244 286 SMART KNOX1_2 39 83 IPR005540 GO:0003677|GO:0005634
Viun9g01244 286 SMART HOX_1 207 272 IPR001356 GO:0003677
Viun9g01244 286 ProSiteProfiles 'Homeobox' domain profile. 205 268 IPR001356 GO:0003677
Viun9g01244 286 ProSiteProfiles ELK domain profile. 185 205 IPR005539 GO:0003677
Viun9g01244 286 Pfam Homeobox KN domain 225 264 IPR008422 GO:0003677|GO:0006355
Viun9g01244 286 Gene3D - 203 275 - -
Viun9g01244 286 SMART ELK_2 185 206 IPR005539 GO:0003677
Viun9g01244 286 SMART KNOX2_2 93 144 IPR005541 GO:0003677|GO:0005634
Viun9g01244 286 ProSitePatterns 'Homeobox' domain signature. 243 266 IPR017970 GO:0000981|GO:0006355
Viun9g01244 286 Pfam KNOX1 domain 41 80 IPR005540 GO:0003677|GO:0005634
Viun9g01244 286 Coils Coil 169 189 - -
Viun9g01244 286 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 82 273 - -
Viun9g01244 286 SUPERFAMILY Homeodomain-like 207 275 IPR009057 -
Viun9g01244 286 Pfam KNOX2 domain 98 143 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01244 Viun-Chr9 12022440 12031126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01244 3 282 Homeobox Transcription Factor Family AT1G23380 41.390 3.85e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Viun9g01244 KNOX2 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01244 - - gmx:102662019 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01244 9 12022440 12031126 Viun9g01244 9 12022440 12031126 ECH