Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01220 ATGGATATTGAGACATTGCTGAAAGAAACCTTTGTCCCACAGCCCTTACAAGAAAGCTGTATGAAAGATATGATTCCTTTGGGAAATCCTTCATCTCAAGAATGCTTGCAAAACTTTCACCATATTGATCAGTTTCACATGAATGTGCCCTCATCCAACAATAACTCAATAATCCAGACCCAAACTTTTGATGCTTTTGACAATTTCACCTTTACTGGTTCATCACCTGATTTAGATGTATATGAGAGCAAGCCTTTTGCTGAGAATAGGCAAACTCATGTCATGGACAATTTCCTTTATGGAAATTATAACTTGATGAACTTCCCTCAGAGGAATGTTGAACTAGACATGATGGTTGCAGATCAAAGCTTTTTGCCTTTTAATCCTCAAGAAATCAAACCCTCCAATTTTGTTTTGCCAGATGAAGTTTCATGCATATCCCCCATGAACTATTACAAAAGAATTGACGTTAACAAAAATAATAAATCCTATCCAACCGCTCGAAGAACGTACAAAGTCCGCAAGAAGTCCAGCACAGTAAAAGGGCATTGGACAATAGAAGAAGATGGATTATTGATTCAACTGGTGGAACAATACGGATTGAGGAAGTGGTCTCATATTGCTAAGATACTGCCCGGAAGAATTGGAAAACAGTGCAGAGAGAGATGGCATAACCATCTAAGGCCTGATATTAAGAAGGACACATGGAACTGCGAAGAGGATAAAATACTAATCGAAGCTCATGCTGAGGTAGGAAACAAATGGGCAGAGATTGCTAAAAGGTTGCCTGGAAGAACTGAGAACTCGATCAAAAACCACTGGAATGCAACCAAGAGAAGGCAATATTCCAAAAGAAAGTGCCGATCCAAGTACCCCAGAGGCACTCTTCTACAAGAGTATATCAAAAGCTTGAACTTAGACAAGAATCCCCCAATAGATTATAGGAGAAAATCTTCTGCTACAAGTACCAAAACCAGCACAAGCAAAGCCACTGCACCAGTTTTGCCCCAGACACCTTTTCAATGCTTGCCACCAGATTCTGATTTCAATGTGGTCCCAGATTTTCTCTTTGCAGAGAATCTCTTCGAAGAAGGTTCCGGTATTCATTCCCTTCTTGATGCTGTCCCTTGTGTTCCCTTTAGGGATAACAAAAATTGTGAAGGAAAATTGCAATGTGATCCTATGATGGAGGGAATGCAGTGTTTTGAAGCTGTTAATGGAGATGAGAATAATGTTGAGACAGATATGGCCCCAGAGATGTTGGAGGTTGAAGTTAAGAAGGAGCTGGATTTGGTTGAGATGATCTCTCAGATTAATGGTGAAACTTTTCATGTTTAA 1338 0.3984 MDIETLLKETFVPQPLQESCMKDMIPLGNPSSQECLQNFHHIDQFHMNVPSSNNNSIIQTQTFDAFDNFTFTGSSPDLDVYESKPFAENRQTHVMDNFLYGNYNLMNFPQRNVELDMMVADQSFLPFNPQEIKPSNFVLPDEVSCISPMNYYKRIDVNKNNKSYPTARRTYKVRKKSSTVKGHWTIEEDGLLIQLVEQYGLRKWSHIAKILPGRIGKQCRERWHNHLRPDIKKDTWNCEEDKILIEAHAEVGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQEYIKSLNLDKNPPIDYRRKSSATSTKTSTSKATAPVLPQTPFQCLPPDSDFNVVPDFLFAENLFEEGSGIHSLLDAVPCVPFRDNKNCEGKLQCDPMMEGMQCFEAVNGDENNVETDMAPEMLEVEVKKELDLVEMISQINGETFHV 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01220 445 FunFam Transcriptional activator Myb isoform A 180 233 - -
Viun9g01220 445 Gene3D - 180 232 - -
Viun9g01220 445 ProSiteProfiles Myb-like domain profile. 176 227 IPR001005 -
Viun9g01220 445 MobiDBLite consensus disorder prediction 315 331 - -
Viun9g01220 445 Gene3D - 234 295 - -
Viun9g01220 445 CDD SANT 235 278 IPR001005 -
Viun9g01220 445 SMART sant 232 280 IPR001005 -
Viun9g01220 445 SMART sant 180 229 IPR001005 -
Viun9g01220 445 PANTHER MYB PROTEIN-RELATED 161 325 - -
Viun9g01220 445 ProSiteProfiles Myb-like domain profile. 228 278 IPR001005 -
Viun9g01220 445 CDD SANT 184 227 IPR001005 -
Viun9g01220 445 MobiDBLite consensus disorder prediction 311 331 - -
Viun9g01220 445 FunFam Transcription factor MYB119 234 298 - -
Viun9g01220 445 SUPERFAMILY Homeodomain-like 179 274 IPR009057 -
Viun9g01220 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 232 282 IPR017930 -
Viun9g01220 445 Pfam Myb-like DNA-binding domain 184 240 - -
Viun9g01220 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 176 231 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01220 Viun-Chr9 11583039 11585338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01220 78 376 MYB Transcription Factor Family AT4G18770 49.697 1.76e-93 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun9g01220 Myb_DNA-bind_6 2.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01220 K09422 - gmx:102662267 638.647