Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01195 ATGGCAATTAGAGGCGTTAATTTCAAATGGTTCGATGGTTTTTTCTTGTCTGTGCTCGCGACCAACACAGCTATTGTGATAATTAATTGGAACTTATACCAATCTTGTACATACCCTCTGCATATATGGACTGTGGTCGATTACAGTGTGGTTTTCACTTTCCGACTCTTGATGTTCATTGATAATGGACTTGCTTCCAGACTGAGAGATTTTGGATGGGCTCTGAGATGTGCTAATTTTTATGGGAGAGTGGTTGTACTTTCAATCCTTGCATTCCTTTTGTATCCATTTCTTTGGGCATGGACAATAATTGGTACCTTATGGTTTATCGACACTAAAATTTGTTTGTCTGGAGGGGGTCAGAAATGGAGCTTCATTATTTGGTTACTCTTTAGCTATTGTGGACTCCTTTGTATTGCTTCTCTCACAGCAGGGAAGTGGTTGAAACGAAGACAATTGCACTTGTTAAATTCCCCAGAGGGTATGCATATATCCGCATTTGGGATTATAATGGAAATGATCCAAGTACCTGATTGGGCATTTGAAGCTGCAAGCACTGCCCAAAATGCTACATTTCATCCTGGACTTTACCTAACTGAAGCTCAGAAAGAAGCAATGGAAGCTTCAATTCAAGAACTTCCAACATTCAAGTTAGATGCGGTTCCTACTACTTGCAACGAATGCCTCATTTGCCTAGAAGAGTTTTGTGCAGGAAATCAGGTTCGTGGGTTGCCCTGTGGTCACAATTTCCATGTGGAATGCATAGACGAGTGGCTTCGGCTTAACGTGAGTTGTCCTCGATGTCGTTGTTCAGCATTTCCTAATCTTAATCTTAATGCAATCTCTGATCTTCATTTCGATCCTGAAGACTTTTCTAACACTAGTATAACAAGAACACATGACTTAAATCAAACTACTAGGTAA 924 0.4026 MAIRGVNFKWFDGFFLSVLATNTAIVIINWNLYQSCTYPLHIWTVVDYSVVFTFRLLMFIDNGLASRLRDFGWALRCANFYGRVVVLSILAFLLYPFLWAWTIIGTLWFIDTKICLSGGGQKWSFIIWLLFSYCGLLCIASLTAGKWLKRRQLHLLNSPEGMHISAFGIIMEMIQVPDWAFEAASTAQNATFHPGLYLTEAQKEAMEASIQELPTFKLDAVPTTCNECLICLEEFCAGNQVRGLPCGHNFHVECIDEWLRLNVSCPRCRCSAFPNLNLNAISDLHFDPEDFSNTSITRTHDLNQTTR 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01195 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 303 IPR044793 GO:0004842|GO:0010182
Viun9g01195 307 Pfam Ring finger domain 226 269 IPR001841 -
Viun9g01195 307 ProSiteProfiles Zinc finger RING-type profile. 228 269 IPR001841 -
Viun9g01195 307 SMART ring_2 228 268 IPR001841 -
Viun9g01195 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 273 IPR013083 -
Viun9g01195 307 SUPERFAMILY RING/U-box 210 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01195 Viun-Chr9 11039448 11043214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01195 58 285 C3H Transcription Factor Family AT3G47990 66.809 1.32e-106 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01195 K16284 - gmx:100786854 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01195 9 11039448 11043214 Viun9g01195 9 11039448 11043214 ECH
Viun3g04434 3 52113234 52120203 Viun9g01195 9 11039448 11043214 PCT