Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01191 ATGAAGAAGAGATTAGCGAGCACCATCGATGATTCCACTAAACTTGATCGCAAAACCATCGAAAGAAACCGCAGAATCCACATGAAATCCCTCTGCCACCAGCTTGGTTCTCTTATTCCTCCCAACCTCAAACCACCCAAATCCAAGCTGATGTTAGGGCAGCAGGACCAGCTGGATCTTGCAGCAAGGTACATAAAACACATGAGAGAGAGAATAGAGAAATTGAAGAGGCAGAAGGAGCAAGCGATGTTGAACCAAAGCAGTGACAGAAAAATGTTGGATAAAAACGTTGACACCAAGTTGCCAATACTTGAGCTAAGGGACTTGGGTTCCGGCATCGAAGTGATGCTGGTGAGTGGGTTGAACAAGACATTCATGTTGTACGAAGTAATTAGCGTTCTCGAGGAAGAAGGTGCCGAAGTTGTCACCGCAAGCTTCTCAACTGTCGGCGACAAGTTATTTTACGTTGTTCACGCTCAGGTTAAAATATCAAGAGTTGGAGTGGAGACGACAAGGGTAAAGGATAGACTTCAAGAATTTATTGCCCCATTAGAAATTTGGCCGGAGGAAGACGTGTGA 579 0.4508 MKKRLASTIDDSTKLDRKTIERNRRIHMKSLCHQLGSLIPPNLKPPKSKLMLGQQDQLDLAARYIKHMRERIEKLKRQKEQAMLNQSSDRKMLDKNVDTKLPILELRDLGSGIEVMLVSGLNKTFMLYEVISVLEEEGAEVVTASFSTVGDKLFYVVHAQVKISRVGVETTRVKDRLQEFIAPLEIWPEEDV 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01191 192 Coils Coil 58 85 - -
Viun9g01191 192 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 180 - -
Viun9g01191 192 SMART finulus 18 74 IPR011598 GO:0046983
Viun9g01191 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 86 IPR036638 GO:0046983
Viun9g01191 192 Pfam Helix-loop-helix DNA-binding domain 17 68 IPR011598 GO:0046983
Viun9g01191 192 FunFam Transcription factor bHLH162 5 96 - -
Viun9g01191 192 Gene3D - 6 97 IPR036638 GO:0046983
Viun9g01191 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 68 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01191 Viun-Chr9 10887329 10888691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01191 7 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 35.294 2.01e-25 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun9g01191 HLH 5.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01191 - - gmx:100790403 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04436 3 52170338 52171502 Viun9g01191 9 10887329 10888691 ECH
Viun9g01191 9 10887329 10888691 Viun9g01191 9 10887329 10888691 ECH
Viun3g04436 3 52170338 52171502 Viun9g01191 9 10887329 10888691 PCT