Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01190 ATGGAAATTGTGATTTCTTTGATCATATTGTTTGTGGGCATAGCGATTTTGGTGGTTATCCATGTATGCATCGTGGGGAGAGTCTTCAGAGGGAACAATACTGATGAAGAAGAAGGTACTACACAGGGACAGAACATGAGTGGAATGAAAAGAATGTTGGGTGAAGACAACATTGGTGACCTCAAAAACCTCCCTTGCTTTGTGTACGAGGAAGCAGCAACAGCATCAGCAGAGAGAAGAGAGTGTAGCAGCCTCGTCGATTGTGCTGTTTGCTTGGAGAGTTTCAAGGTTGGTGATGTGTGCAGGTTGTTGCCCAATTGCAACCACACCTTCCATCTGCACTGTATAGACTCATGGATTCTCCACACACCCATTTGTCCCATTTGCAGAACATGGGTTCTTTCAGTAAGAGAACACCAAAGTGATGCTTCTGAGAATGTAGAAATTGTAACATCATAG 459 0.4379 MEIVISLIILFVGIAILVVIHVCIVGRVFRGNNTDEEEGTTQGQNMSGMKRMLGEDNIGDLKNLPCFVYEEAATASAERRECSSLVDCAVCLESFKVGDVCRLLPNCNHTFHLHCIDSWILHTPICPICRTWVLSVREHQSDASENVEIVTS 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01190 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 134 IPR013083 -
Viun9g01190 152 Pfam Ring finger domain 87 130 IPR001841 -
Viun9g01190 152 SUPERFAMILY RING/U-box 87 142 - -
Viun9g01190 152 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Viun9g01190 152 SMART ring_2 88 129 IPR001841 -
Viun9g01190 152 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01190 Viun-Chr9 10853046 10853504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01190 41 134 C3H Transcription Factor Family AT5G06490 34.579 4.68e-18 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01190 - - vra:106760242 270.781