Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01171 ATGGCACACCACTTTCAATATCTCTGGGTTTTTACAAGAAAAGACGAAAGTGACTTAGGTCCATTCTCACAATGGAACATAACTGGAACTTACAGAGGGACTTGGAAGTTTTTAGATACTACAAATGGTTCTACCAGATTTCCAGACATCAGAAAAATAAATGGAAATTCTGTAATTGAATTAGTTAGTGTGCCAACAAAGATAACTGGTGTACATTATGTGCAGGGGGTAGTCATATTCCATGATGTATTTGACAATGAATACAATGTTGGTGGTGCTCAAATCAGAGTAGAAGGTGTATATATATGGCCTTATAGGCAGCTTCGAATGGTAGCCAACAGTGGTAAAGATGGGGGACTAAATCCGGAGGGAGACTATATTTTATCAAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAAGTATTCCAAGAATCTTCGCGACAAAAGATGTGGAGAAGAAAGCACTCTCCATTGCACGGAATGGAGAAACATTGCAATGTAGAAATAGCTGCACAGGTTTCACGCCTGTCATTGTCAAAGCATGAAGGGGAGCGTGATTCTTTTCAGCTAGTAGGGTTAATGGAGAGTCCGTCTGTGGACGATGATGGGGACTGCTTCTCGCCTTTACAGTTAAATGCAACTTCTATCAACATTGAAGTCTACTATAATAAAGCAGTGAACTATACCTTAATGGTTACTTTTATCTCATTTTTGCAAGTTCTTCTTTTAATTCGGCAAATGGAGCATAGCAACACCCAATCGGGGGCTGCTAAGGTTTCAATATTAACGATTGGTCAGCAAGCTATAGTAGATGCTTATCTTTGCCTTATACATTTGACTGCTGGAATACTAGTTTGCCTGAAGATTCTGGTTAGTTTGGAATACATCATAGCTTTTGAAGCTTGTCTTATGAATAATTGTTGTTACTTACTACCTACCTGCCATGCAGAATCCTTGTTCAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTATTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAGGCAAGTAGGCCTTTGAGCAATGGTGAAGGTTGGGAGGCAATGAGGCGTGAACTATCAGTTTTATACAGCCGATTCTATGGGATCCTACTGGGAGGCATACTGCTCATGTATGAATTCCTCAATCATTTGAGACTTATTCTTCTTCTTGTATACTCCTTTTGGATACCTCAGATAATCACCAATGTTGTTCGTGACTCACGCAAGCCATTGCATCCTCATTACATATTAGGCATAACTGTTACTCGGCTAGCAATCCCATTATATATTTTTGGTTGTCCTAACAACTTCTTGCGTATAGAACCAGATCATAGCTGGTGTGTTTGTTTGGCTATATTTGTTGGACTTCAAGCTGCAATTCTCTTGCTTCAGCACTATTTTGGGTCTATGTGGTTCATTCCTCGTCAGTTTCTACCTGAGAAATACTGCTACTATAGGAGGTTTACTCAAGATACAAATCACTCCACTGACTGTGTTATATGCATGACAGCCATTGATCTTTCTCCACGATCCAATGATTGCATGGTGACACCTTGTGATCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACATGCCGTCGCCCTCTTCCACCTGCCTGA 1668 0.4017 MAHHFQYLWVFTRKDESDLGPFSQWNITGTYRGTWKFLDTTNGSTRFPDIRKINGNSVIELVSVPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIRVEGVYIWPYRQLRMVANSGKDGGLNPEGDYILSNPYHLLGVFSSQVFQESSRQKMWRRKHSPLHGMEKHCNVEIAAQVSRLSLSKHEGERDSFQLVGLMESPSVDDDGDCFSPLQLNATSINIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSILTIGQQAIVDAYLCLIHLTAGILVCLKILVSLEYIIAFEACLMNNCCYLLPTCHAESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWEAMRRELSVLYSRFYGILLGGILLMYEFLNHLRLILLLVYSFWIPQIITNVVRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFLRIEPDHSWCVCLAIFVGLQAAILLLQHYFGSMWFIPRQFLPEKYCYYRRFTQDTNHSTDCVICMTAIDLSPRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01171 555 SMART ring_2 505 548 IPR001841 -
Viun9g01171 555 SMART ringv_2 504 549 IPR011016 GO:0008270
Viun9g01171 555 Pfam Ring finger domain 504 549 IPR001841 -
Viun9g01171 555 FunFam E3 ubiquitin-protein ligase, putative 491 555 - -
Viun9g01171 555 CDD RING-H2_TUL1-like 499 554 - -
Viun9g01171 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 492 555 IPR013083 -
Viun9g01171 555 SUPERFAMILY RING/U-box 485 554 - -
Viun9g01171 555 ProSiteProfiles Zinc finger RING-type profile. 505 549 IPR001841 -
Viun9g01171 555 PANTHER RING ZINC FINGER PROTEIN 81 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01171 Viun-Chr9 10244492 10264241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01171 505 552 C3H Transcription Factor Family AT4G12190 39.583 1.33e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01171 K23788 - gmx:100802452 978.008