Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01164 ATGCATGGACGTGGAGGTGAGAAGGGCACTCGGCACATGTGGAAATCCCCCACACGTGACTCGACTCTGAACGCTGATGTTTCTTCGTCTTCTTCGTCGACAGTGAAGTCATTCTTTAAGGACCGTCGCAAAATTAGTGTTGGTGAATGTGCTCTCTTCAAACCATCTGAAGATCGCCCACCATATATTGGTATAATTCGTTATCTGACAATTGGCAAAGATAAAAAATTGAAGTTTGGTGTTAGTTGGCTCTATCGATCTATTGAAGTAAAACTCAGCAAGGGCGTGCCTTTGGAGGCTGCTCCAAACGAAGTCTTCTACACCTTCCATAAGGATGAGATTGATGCTGAAGCACTGCTCCATCCTTGTAAAGTTGCATTTCTTCCTAAGGGGGCAGAACTTCAACCAGGGATTTCTTCATTTTTGTGCAGGAGGGTTTATGACATTGCAAACAAGTGTTTATGGTGGTTAAATGATCAAGATTATATTAATGATTGTCAAGAAGAAGTAGATAAACTATTATACAGGAATTGTGTAGAAATGCATGCAACAGTGCAGCCGGGTGGCCGTTCTCCTAAGCCTATGAGTAGTCCAACATCAACATCTCAACTAAAATCTGCTTCAGATAGTGTCCAGAACAGTACTTCTTCCTTTCCTTCTCACATTAAGGGGAGGAAAAGGGAAAGGGCAGATCAAGGCTCTGAGTCTGCCAAGCGAGAACGATCAATAAAAACTGAGGATGGGGATTCTGGTAATTTCAGGCATGATAACTTTTTCAAGACAGAGATTGCAAAAATTACTGAGAAGGGAGGGCTTGTTGATGGTGAAGGAGTTGAAAAATTAGTGCAGCTGATGGTTCCTGATAGAAATGAGAAGAAAATAGATTTAGCTAGCCGGTCATTGCTTGCAGCTGTCGTTGCAGCAACAGATAAGTTAGATTGTCTTAGTCAGTTTGTGCAGCAAAGGGGTTTGCCTGTATTTGATGAATGGCTCCAAGAGGTCCATAAAGGGAAGATTGGTGACGGTGATAAATCTGCAGAGGAATTTCTGTTGGTATTGCTTCGGGCACTTGATAAACTTCCAGTAAATCTTCAGGCTTTACAAACATGCAACATTGGAAAATCTGTGAATCATCTGCGAAGTCACAAAAATGCTGAAATTCAGAGGAAAGCAAGAGGTTTAGTTGATACATGGAAGAAACGTGTTGAAGCTGAAATGAATATAAATGATGCAAAGTCTGGTTCAGGTCCCAATGTCCACTGGCCTGCCAAATCACGTCCTTCTGATGTTGGTCAAGGTGGGAATAGACATTCAGGTGCATCATCAGATGTTGCCATGAAGAGTTCAGTTACGCAGCTTTCTGCTTCCAAGACCACTTCTGTGAAGGTTGTCCAGGGAGAGAATATTACTAGATCTGCATCAACATCTGCATTTCCAGGGCCTGCAAAATCAGTGCCGTCACCTGCAGCTGTGACTGCAAATTTAAAAGATGGTCAGCCTCGTATTGTTGCTGTCAATGGAGGTTCTGATCTTCCCATGGCAAATGTAAGGGATGAGAAAAGTTGTAGTTCTAGTCAATCTCACAACAACAGTCAATCTTGTTCTAGTGACCATGCTAAAACTGGAGGTCACTCTGTAAAGGAAGATGCCAGAAGCTCTACTGCAATGAGTGCGAATAAGATTTCTGGAGGCTCTTCACGACATCGAAAATCCATTAATGGATTTTCAGGTTCATCTCCATCTGGAGGGCAAAGGGAAACTGGATCAAGCAGGAATTCCTCCTCGCACAAAAATATAACTTCAGAAAAGATATCTCAACCTGGATTAATGGATAAAGCAGTTGATGGAACTTCTCTTGAGGGTAATATTCCAAAGCTGATTGTTAAAATTCCAAATCAAGGTAGAAGTCCTGCACAAAGTGTCAGTGCTGGTTCTTTTGATGATCCTACAATCATGAATAGTCGAGCCTCATCTCCTGTTCTTCCCGAGAAGCATGATCAGTCTGATAACAGCCCAAAGGAAAAGAACGACCTTTATCGAGTAAATATTGGCTCAGATATTAATACTGAATCTTGGCAGAGTAATGATTTTAAGGAGGTATTGACTGGCTCTGATGAGGGTGATGGGTCACCTGCTGCAGTTACTGATGAAGAGCACTGTCGCACTGGCAATGATTGTAAGAAGGCATTGGAGGTATCAAAAGCTGCCTCATCATCATCTGGAAATGAAAATAAAGCTGGCAATTTGCAGGATGCTTCCTACAGCTCAATAAATGCTTTAATTGAAGGTGTTAAGTACTCTGAAGCTGATGATGGTGGAATGAATCTTCTTGCTAGTGTGGCTGCTGGAGAGATATTGAAATCTGAATTGTTAACTCCAGCTGGATCTCCAGAAAGAAACACACCTACTGTTGAACAGTCATGCACAGACAATGGTGTTAAGTGCTCTGAAGAAAATCTTGTTCGTGATGAATGCCACTCAAATAATGGTCTTGATGTTGAACATAAGAATCTGGCTTCTGTAACAGGTGATTTAGGGGCAAATGATGAAAGCGATTCTGATTTTCAAGCTTCTGGAGGGAAAGCTGCAAGAGAGCTAAATAAGCGTGTTAATGCATGTACTATGGATTTACAACAGGTTGCTGAAACTATGGAAAGCAAAGGAAAATTAAATGAAAAATCTGGACCTACTTCACTGGGTGGTTTTGCTGAAAGTTCTGTACAAGAAGCTGGAAATGGTGATGGAAGCAAGCAGCTACAGGAGGTTGTTCAGGGAGTGAATTCTGGCGAAATTCATGATAAGATCAATTGTGTTGCAGACGTTGAGGCAGAAGTATCTAAAAAATTGTCAAATACAGCTGTTGAAGTGGATGTACAGAGTGATAACTGTGCTGAAGGATCAAGTGGCAGTGGACAGACAGTTAAAAGGCCTCCTGCTATACTTGTTCAGTCTGATTTGGCAAGAGGAAAAGATGATAATGGACTCCATTCTTCTGGTTCTGGTGTTGACAAGGTTCCTAAAGACTGCCCTGAACGGGAATCTGACAAAACTGATGATGTTGATGCTGAGAATCATGTCAATCAGTCTAGAAGTAAAAGAAATGAGTCTGAAAGTGATTCCTTGACCATGCCTGAGAATAGAGGTACATGTTCTATTGTGACTGGTCTTGTTGCTGAACATGTAGAGGAGAATTTAGAAACAAAAATTGTTCGTGACCAACCTTCTAGAGAGGATCTTCCTGAAGATTCACCTGGTGTTGTTTCACAAGAAATCAATAAGCATCACGATTCTAAAAGGTTGAAGTTGACGTCCTCAGAAGCAGAGGAGGCTGAGGAGTGCACCTCTACCACTGCAGATGCTTCTTCCATGTCTGCTGCAGCTGTGTCAGATGCGGATGCAAAGGTCGAATTTGATTTAAATGAAGGGCTCAATGCAGATGATGGAAGATGTGAGTTCAATAGCATTGCCAATTCTGGATGTGCACCATCTGGTCGATTGATCAGTCCTGTCCCATTTCCTGCTTCATCTATGTCCTGTGGTATTCTTGCCCCAGTCACTTTGGCGTCTGCAGCTAAGGGGCACTTTGTGCCTCCTGAAGATTTATTGAGAAGTAAAGGGGAAATTGGTTGGAAGGGATCAGCTGCCACCAGTGCATTCAGGCCAGCTGAACCCAGGAAAGTTATGGAAATGCCTTTTGGTACATCAGCTACCCCTATTCCTGATGCTCCAGCTGGAAAGCAGAGTCGAGCACCATTGGATATTGACTTGAATGTGGCCGATGAAAGAATACTTGATGACATTTCTTGTGCTCGACACACAAATTCTATATCTCTTGCAACTGATAGTCATGATCCTGTATGCAGTAAAATACCTTCACCTGTTCGCAGCTCTGGAGGGCTTGGTCTTGACTTAAACCAAGTGGATGATGCTTCCGACATGGGCATTTGCTTGAACATTAATCATAAAATTGATGTGCCAACTATGCAGGGGAAGTCATCATTGGGTGGTCCACCAATTAGAGAAGTGAATGTGCATAGGGACTTTGATTTGAACAATGGACCTTCTGTTGAGGAAATCACCACTGAATCCTCATTGTTCTCTCCGCACGCCAGGAGCAATGTGACATCTCAATTACCTGTTTCTGGACTTAGAGTGGCTACTGCTGAGCCAGGCAACTTCTCTTGGCTTCCTTCCAGTGGCAACACCTATTCTGCTGTCACAATATCTTCAATTATGCCTGATAGAGGTGATCAACCCTTTTCAATTGTTGCTCCTAATGGGCCACAAAGGTTGTTGACTCCCGCTGCTGGTGGCAACCCATTCGGACCTGATATTTATAGGACCCCAGTATTGTCATCTTCTCCTGCAGTGTCATATCCATCTGCTCCATTTGAATATCCCGTCTTCCCTTTTAACTCCAGCTTCCCTCTTCCATCAGCTTCGTTTTCTGCTGGGTCAACTACTTATGTATATCCAACATCAGCCAATCGGCTTTGCTTCCCTGCAGTAAATTCACAGTTAATGGGGCCTGCTGGCACAGTTTCATCTCACTACCCCAGGCCCTATGTTGTTGGTCTTCCGGAAGGTAACAATAGTGGTAGTGCTGAGACCAGTAGAAAATGGACAAGGCAGGGTTTAGATCTTAATGCTGGACCTGGGTGTTCAGAAATGGAGGGGAGAGATGAGAGTTCACCTCTTCCATCTAGGCAACTTTCTGTTGCTAGTTCACAGGCCCTAGCTGAGGAGCAAGCAAGGATTCAGCTTGCAGGTAGTGTTCGGAAGAGGAAGGAGCCTGATGGTGGGTGGGATGGCTACAACCAATCCTCATGGCAATAG 4836 0.4332 MHGRGGEKGTRHMWKSPTRDSTLNADVSSSSSSTVKSFFKDRRKISVGECALFKPSEDRPPYIGIIRYLTIGKDKKLKFGVSWLYRSIEVKLSKGVPLEAAPNEVFYTFHKDEIDAEALLHPCKVAFLPKGAELQPGISSFLCRRVYDIANKCLWWLNDQDYINDCQEEVDKLLYRNCVEMHATVQPGGRSPKPMSSPTSTSQLKSASDSVQNSTSSFPSHIKGRKRERADQGSESAKRERSIKTEDGDSGNFRHDNFFKTEIAKITEKGGLVDGEGVEKLVQLMVPDRNEKKIDLASRSLLAAVVAATDKLDCLSQFVQQRGLPVFDEWLQEVHKGKIGDGDKSAEEFLLVLLRALDKLPVNLQALQTCNIGKSVNHLRSHKNAEIQRKARGLVDTWKKRVEAEMNINDAKSGSGPNVHWPAKSRPSDVGQGGNRHSGASSDVAMKSSVTQLSASKTTSVKVVQGENITRSASTSAFPGPAKSVPSPAAVTANLKDGQPRIVAVNGGSDLPMANVRDEKSCSSSQSHNNSQSCSSDHAKTGGHSVKEDARSSTAMSANKISGGSSRHRKSINGFSGSSPSGGQRETGSSRNSSSHKNITSEKISQPGLMDKAVDGTSLEGNIPKLIVKIPNQGRSPAQSVSAGSFDDPTIMNSRASSPVLPEKHDQSDNSPKEKNDLYRVNIGSDINTESWQSNDFKEVLTGSDEGDGSPAAVTDEEHCRTGNDCKKALEVSKAASSSSGNENKAGNLQDASYSSINALIEGVKYSEADDGGMNLLASVAAGEILKSELLTPAGSPERNTPTVEQSCTDNGVKCSEENLVRDECHSNNGLDVEHKNLASVTGDLGANDESDSDFQASGGKAARELNKRVNACTMDLQQVAETMESKGKLNEKSGPTSLGGFAESSVQEAGNGDGSKQLQEVVQGVNSGEIHDKINCVADVEAEVSKKLSNTAVEVDVQSDNCAEGSSGSGQTVKRPPAILVQSDLARGKDDNGLHSSGSGVDKVPKDCPERESDKTDDVDAENHVNQSRSKRNESESDSLTMPENRGTCSIVTGLVAEHVEENLETKIVRDQPSREDLPEDSPGVVSQEINKHHDSKRLKLTSSEAEEAEECTSTTADASSMSAAAVSDADAKVEFDLNEGLNADDGRCEFNSIANSGCAPSGRLISPVPFPASSMSCGILAPVTLASAAKGHFVPPEDLLRSKGEIGWKGSAATSAFRPAEPRKVMEMPFGTSATPIPDAPAGKQSRAPLDIDLNVADERILDDISCARHTNSISLATDSHDPVCSKIPSPVRSSGGLGLDLNQVDDASDMGICLNINHKIDVPTMQGKSSLGGPPIREVNVHRDFDLNNGPSVEEITTESSLFSPHARSNVTSQLPVSGLRVATAEPGNFSWLPSSGNTYSAVTISSIMPDRGDQPFSIVAPNGPQRLLTPAAGGNPFGPDIYRTPVLSSSPAVSYPSAPFEYPVFPFNSSFPLPSASFSAGSTTYVYPTSANRLCFPAVNSQLMGPAGTVSSHYPRPYVVGLPEGNNSGSAETSRKWTRQGLDLNAGPGCSEMEGRDESSPLPSRQLSVASSQALAEEQARIQLAGSVRKRKEPDGGWDGYNQSSWQ 1611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01164 1611 ProSiteProfiles BAH domain profile. 43 158 IPR001025 GO:0003682
Viun9g01164 1611 MobiDBLite consensus disorder prediction 408 442 - -
Viun9g01164 1611 MobiDBLite consensus disorder prediction 1 15 - -
Viun9g01164 1611 MobiDBLite consensus disorder prediction 1 29 - -
Viun9g01164 1611 MobiDBLite consensus disorder prediction 1529 1611 - -
Viun9g01164 1611 MobiDBLite consensus disorder prediction 633 665 - -
Viun9g01164 1611 MobiDBLite consensus disorder prediction 548 605 - -
Viun9g01164 1611 MobiDBLite consensus disorder prediction 630 678 - -
Viun9g01164 1611 MobiDBLite consensus disorder prediction 185 251 - -
Viun9g01164 1611 MobiDBLite consensus disorder prediction 1068 1098 - -
Viun9g01164 1611 Pfam TFIIS helical bundle-like domain 353 402 IPR017923 -
Viun9g01164 1611 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 277 406 IPR035441 -
Viun9g01164 1611 MobiDBLite consensus disorder prediction 221 251 - -
Viun9g01164 1611 CDD TFIIS_I 338 403 - -
Viun9g01164 1611 MobiDBLite consensus disorder prediction 1530 1544 - -
Viun9g01164 1611 MobiDBLite consensus disorder prediction 502 616 - -
Viun9g01164 1611 MobiDBLite consensus disorder prediction 700 722 - -
Viun9g01164 1611 Pfam BAH domain 44 151 IPR001025 GO:0003682
Viun9g01164 1611 MobiDBLite consensus disorder prediction 190 220 - -
Viun9g01164 1611 SMART TFS2_5 331 404 IPR003617 GO:0005634
Viun9g01164 1611 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 313 416 IPR035441 -
Viun9g01164 1611 SMART BAH_4 43 158 IPR001025 GO:0003682
Viun9g01164 1611 MobiDBLite consensus disorder prediction 884 915 - -
Viun9g01164 1611 MobiDBLite consensus disorder prediction 989 1048 - -
Viun9g01164 1611 MobiDBLite consensus disorder prediction 518 540 - -
Viun9g01164 1611 ProSiteProfiles TFIIS N-terminal domain profile. 325 405 IPR017923 -
Viun9g01164 1611 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1611 - -
Viun9g01164 1611 MobiDBLite consensus disorder prediction 1565 1582 - -
Viun9g01164 1611 Gene3D - 27 266 IPR043151 -
Viun9g01164 1611 MobiDBLite consensus disorder prediction 1005 1040 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01164 Viun-Chr9 10144480 10151372 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Viun9g01164 BAH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01164 - - gmx:100788512 2571.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02578 4 40652186 40659368 Viun9g01164 9 10144480 10151372 ECH
Viun9g01164 9 10144480 10151372 Viun9g01164 9 10144480 10151372 ECH