Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun9g01158 | ATGGCATCATTTGCAGGGACTACCCAGAAGTGCAAAGCATGTGAGAAGACAGTGTATTTGGTGGATCAGCTCACTGCTGACAACAAGATCTATCACAAATCTTGTTTCAGATGCTACCACTGCAAGGGTACCCTAAAGCTGAGTAACTATTGTTCCTTTGAGGGAGTTTTATATTGTAAGCCTCATTTTGATCAACTCTTTAAGAAGACTGGTAGCTTGGAGAAAAGTTTTGAAGGTATTCCAAGAACTGCTAGACTTGAAAGATCTGCTGATCAGGTCCAAACCAATAGCAAGGTTTCAAATTTATTTGCTGGAACCCAGGAAAAATGTGTTGCTTGCAAGAAAACAGTTTACCCAATTGAAAAGGTAGCTGTTGATGGAACATCTTACCATAAGGCTTGTTTCAGGTGCACTTATGGAGGATGTGTAATTAGCCCATCAAATTATGTTGCCCATGAACACCGTCTTTATTGTAGGCACCATCACACTCAGTTGTTCAAGCAGAAAGGTAACTTTAGCCAACTCGACAAGCAAGAAAATGATGAAGGGGTGACAGAGAACACAGCAACAGAGTAG | 576 | 0.4097 | MASFAGTTQKCKACEKTVYLVDQLTADNKIYHKSCFRCYHCKGTLKLSNYCSFEGVLYCKPHFDQLFKKTGSLEKSFEGIPRTARLERSADQVQTNSKVSNLFAGTQEKCVACKKTVYPIEKVAVDGTSYHKACFRCTYGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDKQENDEGVTENTATE | 191 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun9g01158 | 191 | CDD | LIM1_SF3 | 7 | 69 | - | - | |
Viun9g01158 | 191 | ProSiteProfiles | LIM domain profile. | 9 | 69 | IPR001781 | - | |
Viun9g01158 | 191 | ProSitePatterns | LIM zinc-binding domain signature. | 11 | 45 | IPR001781 | - | |
Viun9g01158 | 191 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 102 | 135 | - | - | |
Viun9g01158 | 191 | Gene3D | Cysteine Rich Protein | 104 | 174 | - | - | |
Viun9g01158 | 191 | Gene3D | Cysteine Rich Protein | 5 | 75 | - | - | |
Viun9g01158 | 191 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 136 | 174 | - | - | |
Viun9g01158 | 191 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 36 | - | - | |
Viun9g01158 | 191 | PANTHER | OS06G0237300 PROTEIN | 2 | 94 | - | - | |
Viun9g01158 | 191 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 37 | 77 | - | - | |
Viun9g01158 | 191 | FunFam | LIM domain and actin-binding 1 | 5 | 75 | - | - | |
Viun9g01158 | 191 | SMART | lim_4 | 10 | 62 | IPR001781 | - | |
Viun9g01158 | 191 | SMART | lim_4 | 109 | 161 | IPR001781 | - | |
Viun9g01158 | 191 | Pfam | LIM domain | 110 | 165 | IPR001781 | - | |
Viun9g01158 | 191 | Pfam | LIM domain | 11 | 65 | IPR001781 | - | |
Viun9g01158 | 191 | CDD | LIM2_SF3 | 110 | 170 | - | - | |
Viun9g01158 | 191 | FunFam | LIM domain and actin-binding 1 | 104 | 174 | - | - | |
Viun9g01158 | 191 | ProSiteProfiles | LIM domain profile. | 108 | 168 | IPR001781 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun9g01158 | Viun-Chr9 | 10019271 | 10022190 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | LIM | Viun9g01158 | LIM | 4.7e-10 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun9g01158 | K09377 | - | gmx:100500501 | 400.593 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun9g01158 | 9 | 10019271 | 10022190 | Viun9g01158 | 9 | 10019271 | 10022190 | ECH | |
Viun3g04463 | 3 | 52343007 | 52346346 | Viun9g01158 | 9 | 10019271 | 10022190 | PCT |