Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01152 ATGGGTGGCAATGGGAAGCACAGATGGAAAATCTCCTTTCACCGCTCTTCTTCTCAATCCTCTAAGCACGACCCTAAGCTCCCTCCCAAGGAATTTACGTGCCCCATTTCGGGCTCCTTAATGTCCGACCCGGTTGTCGTCGCTTCGGGTCAGACCTTCGAACGCCTCGCCGTTCAAGTCTGCAAGGACCTCAACTTCTCCCCCAAACAAGAAGACGGAACCCGACCCGATTTCTCAACGGTAATCCCCAACTTAGCCCTCAAAACTACAATCCTCAACTGGTGCGACAAATCCCGCTCCCAGCACCCGCGCGCACCCGATTACGCCTCCCTCGTGGGCCGCGTCAGGCAAGAAATGGCTCTTTCAGTGGAACGAAACCAGCAGGACGAACGACAAGAACGAATTAGGGTTTCCGAAAAGGAGCTTCTCAACGCGGTCGCTGATAATCCTCCCGTCATTTTCTCCCACGCCGCCACTGAGTTGAGCCCCCGACTCAACCACTTCAACTCGGGATCCTCCTCCGAGGAATCCGTCATCATTCCGCCCAGTCCGGGGACGCCGTTGCCGTTTACTGTTCGTCCAACCTGCTTCTCCTCCTCCTCCTCCTGCGAGATTGAAATTGAAAACCCTAGCGCGCCGGTTTCGGAGGAAGAGGAAAGAATACTGAAGAAATTGAAGAGCAGCGAGGTGTTTGAGCAAGAGGAAGGCGTAATCGCGCTGAGGAAGATCACGAGGAGCAAAGTGGAGGCTAGGCTCTTGCTCTGCACGCCGCGGGTGCTGCTGGCGCTGCGCGGTTTGATCGCATCGCGGTATGGCGTTGTTCAGGTCAACGCGGTGGCGTCGCTGGTCAACCTCTCGCTGGAGAAGCAGAACAAGGTGAAGATAGTGAGGTCAGGGTTTGTTCCGTTTTTAATCGATGTTTTGAAGGGGGGATTGGATGAGTCGCAGGAGCACGCTGCGGGCGCGCTTTTCAGTTTAGCCTTGGATGATGATAATAAAATGGCCATTGGCGTTCTCGGCGCGCTGGAGCCGCTGATACACTCGCTGCGTGCCGAGTCCGAGAGGACTCGGCATGACTCGGCCCTCGCTTTGTATCATCTGAGCCTTGTTCAGAGTAACCGAGTGAAGCTGGTGAAACTCGGGGCGGTGCCGACGCTTTTGTCCATGGTGGTGGCGGGGAACTTGGCGAGCCGGGTGCTGCTGATTCTGTGCAACCTGGCGGTGTGCACGGAGGGGCGCACGGCGATGCTGGACGCGAACGCGGTGGAGTGTCTGGTGGGGCTGTTGAGGACGAATGAGTTGGACTCGGAGGCGACTCGGGAGAATTGCGTGGCGGCGCTGTTCGCGCTGAGTCATAGGAGCTTGAGGTTCAAAGGGTTGGCGAAGGACGCGAGGGTTGTGGAGGTTTTGAAGGAGGTTGAACAAACGGGAACGGAGAGGGCCAGGGAGAAGGCCAGGAAGGTGTTGCACATGTTGAGAACTGTGAGCGATGGAGGTGATGATGAAGGTGACGAATTTTACGACTCGGCTGGGTTGACGCGGAATCGTTACCGAATTGGTGCTGCCAGGAACCACAACATCCTCAACACGACCACGTTTTAG 1602 0.5655 MGGNGKHRWKISFHRSSSQSSKHDPKLPPKEFTCPISGSLMSDPVVVASGQTFERLAVQVCKDLNFSPKQEDGTRPDFSTVIPNLALKTTILNWCDKSRSQHPRAPDYASLVGRVRQEMALSVERNQQDERQERIRVSEKELLNAVADNPPVIFSHAATELSPRLNHFNSGSSSEESVIIPPSPGTPLPFTVRPTCFSSSSSCEIEIENPSAPVSEEEERILKKLKSSEVFEQEEGVIALRKITRSKVEARLLLCTPRVLLALRGLIASRYGVVQVNAVASLVNLSLEKQNKVKIVRSGFVPFLIDVLKGGLDESQEHAAGALFSLALDDDNKMAIGVLGALEPLIHSLRAESERTRHDSALALYHLSLVQSNRVKLVKLGAVPTLLSMVVAGNLASRVLLILCNLAVCTEGRTAMLDANAVECLVGLLRTNELDSEATRENCVAALFALSHRSLRFKGLAKDARVVEVLKEVEQTGTERAREKARKVLHMLRTVSDGGDDEGDEFYDSAGLTRNRYRIGAARNHNILNTTTF 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01152 533 Gene3D - 215 512 IPR011989 -
Viun9g01152 533 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Viun9g01152 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 107 IPR013083 -
Viun9g01152 533 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Viun9g01152 533 FunFam RING-type E3 ubiquitin transferase 9 102 - -
Viun9g01152 533 PANTHER U BOX DOMAIN-CONTAINING 21 492 - -
Viun9g01152 533 Pfam U-box domain 29 98 IPR003613 GO:0004842|GO:0016567
Viun9g01152 533 SMART arm_5 329 369 IPR000225 GO:0005515
Viun9g01152 533 SMART arm_5 409 452 IPR000225 GO:0005515
Viun9g01152 533 SMART arm_5 288 328 IPR000225 GO:0005515
Viun9g01152 533 SUPERFAMILY ARM repeat 221 492 IPR016024 -
Viun9g01152 533 FunFam RING-type E3 ubiquitin transferase 216 492 - -
Viun9g01152 533 MobiDBLite consensus disorder prediction 1 30 - -
Viun9g01152 533 SUPERFAMILY RING/U-box 15 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01152 Viun-Chr9 9921947 9924297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01152 1 533 U-box Gene Family AT5G65200 56.360 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01152 - - gmx:100784564 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun4g02564 4 40531909 40534250 Viun9g01152 9 9921947 9924297 ECH
Viun9g01152 9 9921947 9924297 Viun9g01152 9 9921947 9924297 ECH