Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01144 ATGGCCATCTCAGTACCCAGTAGGCAACTATTCATTGATGGAGAGTGGAAAGTCCCCCTCCACAACAACCGTATTCCGATCATCAATCCCGCAACCCAAGACATCATAGGGGACATACCTGCGGGTACCGAGGAAGATGTTGACCTTGCTGTGGATGCTGCTAAAAGAGCCTTGTCCCGGAACAAAGGCAGAGATTGGTCATCAGCTTCTGGTTCTGTTCGTGCTGGTTATCTTCGAGCCATCGCTTCAAAGATAACGGAGAAAAAGGATGAACTGGGAAAGCTTGAAGCAATTGATAGTGGAAAACCACTAGATGAAGCACTGGCAGACGTGGATGATGTTATTGCATGTTTTAACTACTATGCTGAGCTTGCAGAAGGGTTGGATGCAAAGCAAAAGGCTCCTGTATCCCTCCCTATGGAAACTTTCAAGAGTTATATCCTGAAGGAGCCCATTGGAGTTGTTGCATTAATTACTCCATGGAACTATCCTCTCTTAATGGCTACATGGAAAGTTGCTCCTGCTCTGGCTGCTGGTTGTGCTGCAATATTGAAGCCATCTGAATTGGCATCTGTGACCTGTTTGGAGCTGGCTGAAATATGCAGAGAAGTGAACCTTCCCCCAGGGGTATTAAATGTTGTTACTGGATTAGGCAATGATGCTGGTGCTCCTTTGGCTTCTCATCCTGATGTAGACAAGGTTGCCTTCACTGGAAGCTCTTTAACTGGGAGTAAGATTATGTCAGCTGCAGCACAGCTAACCAAGCCTGTTTCTCTAGAGCTTGGTGGAAAAAGCCCAATCATTGTTTTTGAGGATGTTGACCTTGACAAGACTGCTGAATGGACAATCTTTGGCTGCTTCTTTACAAATGGTCAGATTTGCAGTGCAACATCTCGCCTTATCGTGCATGAAAGTATAGCAACAGAATTTGTGGATAAACTTGTGAAATGGGCCAAAAACATCAAAATTTCAGATCCTTTGGAAGAAGGCTGCAGGCTAGGCCCTATTGTTAGTGAAGGACAGTACAAAAAGGTGTTGAATTTCATCTCAACAGCTAAGAGTGAAGGTGCAACAATTTTGACAGGAGGGTCTCGTCCAGAGCATTTGAAAAGGGGATACTTTGTTGAACCAACCATCATCACTGATGTGACTACCTCAATGCAAATTTGGAGAGAAGAAGTTTTTGGACCTGTACTCTCTGTGAAAACATTCAGTACCGAAGAAGAAGCTATTGAACTAGCAAATGACACCCAATACGGTTTAGGATCTGCCGTAATGTCAAAAGATCTAGAAAGATGTGAACGTATATCTCAGGCTATTAAAGCTGGAATTGTATGGATAAATTGTGCTCAACCAAGCTTCATTCAAGCACCATGGGGAGGCATAAAACGTAGTGGCTTTGGTCGTGAATTAGGAGAATGGGGTCTGGAGAACTATTTAAGTGTGAAGCAAGTGACCAAGTACATATCTGATGAACCGTGGGGCTGGTATCAATCTCCTTCAAAGCTGTGA 1512 0.4405 MAISVPSRQLFIDGEWKVPLHNNRIPIINPATQDIIGDIPAGTEEDVDLAVDAAKRALSRNKGRDWSSASGSVRAGYLRAIASKITEKKDELGKLEAIDSGKPLDEALADVDDVIACFNYYAELAEGLDAKQKAPVSLPMETFKSYILKEPIGVVALITPWNYPLLMATWKVAPALAAGCAAILKPSELASVTCLELAEICREVNLPPGVLNVVTGLGNDAGAPLASHPDVDKVAFTGSSLTGSKIMSAAAQLTKPVSLELGGKSPIIVFEDVDLDKTAEWTIFGCFFTNGQICSATSRLIVHESIATEFVDKLVKWAKNIKISDPLEEGCRLGPIVSEGQYKKVLNFISTAKSEGATILTGGSRPEHLKRGYFVEPTIITDVTTSMQIWREEVFGPVLSVKTFSTEEEAIELANDTQYGLGSAVMSKDLERCERISQAIKAGIVWINCAQPSFIQAPWGGIKRSGFGRELGEWGLENYLSVKQVTKYISDEPWGWYQSPSKL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01144 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Viun9g01144 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Viun9g01144 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 277 - -
Viun9g01144 503 Pfam Aldehyde dehydrogenase family 22 485 IPR015590 GO:0016491
Viun9g01144 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Viun9g01144 503 CDD ALDH_F10_BADH 27 487 - -
Viun9g01144 503 PANTHER ALDEHYDE DEHYDROGENASE 5 502 - -
Viun9g01144 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
Viun9g01144 503 SUPERFAMILY ALDH-like 5 486 IPR016161 GO:0016491
Viun9g01144 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01144 Viun-Chr9 9711178 9715232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01144 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 77.046 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01144 K00130 - gmx:100170755 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01144 9 9711178 9715232 Viun9g01144 9 9711178 9715232 ECH
Viun3g04479 3 52528441 52533024 Viun9g01144 9 9711178 9715232 PCT