Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01141 ATGTCTACCTCCTCAACCCACCACACCTATAGCCGCAAGCAGAAATCACTCGGCTTATTGTGCACCAATTTTCTCAGGCTGTACAACAGAGAAGGCGTTCGCTTAATTGGTCTCGATGACGCCGCATCGCGACTAGGTGTTGAGAGACGCCGGATCTACGATATCGTCAACGTCCTAGAGAGCGTCGGGGTGCTGACCAGAAAAGCTAAGAATCAGTATACCTGGAAAGGCTTTTCTGCGATTCCCGAGGCTTTGCAAGAACTTAAGGAAGATGGTTTGAAAGAGAATCCTGGGTCTTTTGATGACTCCAATGACAGCGCGAAAGTGTCTGATGATGAGGATGAGGAGGAAACTTCTCCCCATGTCAATGCTGAAAGTCAGAATGACAAGGAAATTCCTGATTCCACCGCTCTTGGTCTATGCTCTAAGAATGAAAACAGAAGGGAAAAGTCTCTGGCATTGCTTACTCAGAATTTTGTCAAGCTTTTTATCTGCTCTAGTATTGAAATGATCTCCCTTGACGAAGCTGCAAAGCTGTTGCTTGGAAATGCTAATACATCAATAATGAGGACTAAAGTCAGACGCCTATATGATATTGCAAATGTGTTATCCTCCATGAACCTAATCGAGAAGACCCATACAACAAATACAAGAAAACCAGCATTTAGATGGCTGGGTTGGAGAGGGAAAGCATGGAGTGAATCAGTTGACTTAGGTCACAATTCAAATTTCAACGAGCCAGGGAAAAGAAAGTTTGGAACTGACATCACAAACACAAGTTTTAAAAGGAGCAAAACTGATTTTCTCTTGGATGGCCACACCTGTAAAATGCAAAATCAACAAGAAAATATGAGTTACAGAGTACAGCCGGAGAGAAGCAACTTTGAAAAAGATGCAAAACAGACTTCAAAGGGCTATCAGTTTGGTCCTTTCGCTCCAGCTTATGTGCCAAAAGTCGGAACCTCTGAAGATAATAGCGGGAATCAGGTGCATGACTGGGACAGCCTCGCCCAGGTTCATCGTCCTCAGTATCAAAACCAAGCTTTGAGAGACCTATTCTCTCACTACATGGATGCATGGAAATCATGGTACTCTGAAGTCGCTGAGAAAAAGCCAACTTTATAA 1125 0.4364 MSTSSTHHTYSRKQKSLGLLCTNFLRLYNREGVRLIGLDDAASRLGVERRRIYDIVNVLESVGVLTRKAKNQYTWKGFSAIPEALQELKEDGLKENPGSFDDSNDSAKVSDDEDEEETSPHVNAESQNDKEIPDSTALGLCSKNENRREKSLALLTQNFVKLFICSSIEMISLDEAAKLLLGNANTSIMRTKVRRLYDIANVLSSMNLIEKTHTTNTRKPAFRWLGWRGKAWSESVDLGHNSNFNEPGKRKFGTDITNTSFKRSKTDFLLDGHTCKMQNQQENMSYRVQPERSNFEKDAKQTSKGYQFGPFAPAYVPKVGTSEDNSGNQVHDWDSLAQVHRPQYQNQALRDLFSHYMDAWKSWYSEVAEKKPTL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01141 374 SUPERFAMILY "Winged helix" DNA-binding domain 149 227 IPR036390 -
Viun9g01141 374 MobiDBLite consensus disorder prediction 93 140 - -
Viun9g01141 374 Gene3D - 141 228 IPR036388 -
Viun9g01141 374 Gene3D - 7 79 IPR036388 -
Viun9g01141 374 PANTHER TRANSCRIPTION FACTOR E2F 5 345 IPR015633 GO:0000978|GO:0006357
Viun9g01141 374 FunFam E2F transcription factor 8 7 79 - -
Viun9g01141 374 FunFam E2F transcription factor-like E2FE 142 228 - -
Viun9g01141 374 SMART E2F_TDP_2 147 226 IPR003316 GO:0005667|GO:0006355
Viun9g01141 374 SMART E2F_TDP_2 12 77 IPR003316 GO:0005667|GO:0006355
Viun9g01141 374 Pfam E2F/DP family winged-helix DNA-binding domain 149 226 IPR003316 GO:0005667|GO:0006355
Viun9g01141 374 Pfam E2F/DP family winged-helix DNA-binding domain 13 77 IPR003316 GO:0005667|GO:0006355
Viun9g01141 374 SUPERFAMILY "Winged helix" DNA-binding domain 11 75 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01141 Viun-Chr9 9690974 9697707 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01141 7 372 E2F-DP Transcription Factor Family AT3G48160 57.979 1.86e-131 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Viun9g01141 E2F_TDP 2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01141 K09391 - gmx:100818090 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01141 9 9690974 9697707 Viun9g01141 9 9690974 9697707 ECH
Viun3g04481 3 52537512 52541376 Viun9g01141 9 9690974 9697707 PCT