Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01127 ATGATGTTTCTCTCTCAGTGTCACACTCATCCATTAACACATTCATGTTCTCACTTTCCAATGGATCCTCCTCTCATCACTCACTCCACATTCTCCTCCGCTTACACCCTCGCCGATATTTGGCTCGGAACCTCCGACCACCACTTCTCCAAGAATGACTCTAGTAGCAATAAACGGATGAAGGTGGAAGGGTCCAGTATTAAAAATGATGGTTTCAAAGAGGAAGCAGAAACAAGTTCTGTGAGTGGTAACAAGTCAAGTGAACAAAGCACTATACCTTGTGATGCACCCAAGCAAGACTATATTCACGTGAGAGCAAGAAGGGGTCAAGCTACTGATAGCCACAGTCTAGCAGAAAGAGCAAGAAGAGAAAAGATCAGTGAGAGAATGAAAATTCTGCAGGACTTGGTTCCAGGGTGTAACAAGGTAATTGGTAAAGCACTAGTCCTAGATGAGATAATCAATTACATACAGTCTCTGCAGCGTCAGGTTGAGTTCCTTTCTATGAAGCTTGAAGTAGTTAATTCAAGGATGAACATGAGCCCTAACATAGATGGGTTTCCTTTAAAAGATGTTGGTGGTGCTGGAATGGTATTTGGATCACAAGCAGCAACAGGGTATGCTCAGGGATCACATCCTGGATGGCTGCATATGCAGATAGGTGGTGGTTTGAGAGAACAACATAGTTTAGAGAAGTCTCATTGGGAAAGAAACATCATCAACTGA 726 0.4311 MMFLSQCHTHPLTHSCSHFPMDPPLITHSTFSSAYTLADIWLGTSDHHFSKNDSSSNKRMKVEGSSIKNDGFKEEAETSSVSGNKSSEQSTIPCDAPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEVVNSRMNMSPNIDGFPLKDVGGAGMVFGSQAATGYAQGSHPGWLHMQIGGGLREQHSLEKSHWERNIIN 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01127 241 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 52 209 IPR024097 GO:0006355
Viun9g01127 241 SMART finulus 116 166 IPR011598 GO:0046983
Viun9g01127 241 MobiDBLite consensus disorder prediction 48 98 - -
Viun9g01127 241 MobiDBLite consensus disorder prediction 76 94 - -
Viun9g01127 241 Pfam Helix-loop-helix DNA-binding domain 114 161 IPR011598 GO:0046983
Viun9g01127 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 108 180 IPR036638 GO:0046983
Viun9g01127 241 FunFam Basic helix-loop-helix transcription factor 107 179 - -
Viun9g01127 241 CDD bHLH_AtBPE_like 100 185 - -
Viun9g01127 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 160 IPR011598 GO:0046983
Viun9g01127 241 MobiDBLite consensus disorder prediction 51 75 - -
Viun9g01127 241 Gene3D - 107 183 IPR036638 GO:0046983
Viun9g01127 241 Coils Coil 157 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01127 Viun-Chr9 9470309 9473334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01127 21 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 42.143 2.03e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun9g01127 HLH 1.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01127 - - vra:106758689 393.275