Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01113 ATGAGTCTCATTGTTCATGGACTGGTATCACTTGTCATCCTGGGGAACAACGAGTTCGCTCAATGTATAAATCTACCTTATATGCAACTGGGAGGTATTATATCTCCCAGCATTGGCAAACTCAGCAGACTGCATAGACTGGCCCTTCATCAGAATGGCTTACATGGAGTTATCCCTAATGAAATTGGCAATTGTACAGAGCTTAGAGCACTGTACTTGAGAGCTAACTATTTACAAGGAGGCATTCCATCAGATATTGGAAATCTTTCTTATTTACATGTATTGGATTTATCAAGTAACTCATTGAAGGGTGCTATACCATCTTCTATTGGTCGTCTTACACAATTGCGTGTTCTGAACTTGTCAACCAATTTCTTTTCCGGTGAAATCCCTGACATTGGAGTACTAAGCACCTTCAGGAACAATGCGTTTATTGGGAACTTAGATCTTTGTGGGCGGCAAGTTCAGAAACCATGTCGGACATCACTTGGTTTCCCAGTGGTGCTACCACATGCAGAAAGTGATGAAGCTGCAGTTCCTGCTAAAAGATCTCCACATTACGTGAAGTGGCTGTTAGTTGGTGCAATAACAATAATGGGGCTTGCACTTGTTATAACTCTTTCGTTACTATGGATTTGCCTGCTGTCAAAGAAGGAAAGAGCTGCTAGAAAATACATAGAAGTTAAGGATCAAGTCAACCCAGAATCAAGTAGGAAGGATGATGGTACAAAACTTATCACCTTCCATGGTGATCTGCCATACACATCATGTGAGCTCATAGAAAAGTTGGAGTCTCTCGACGAAGATGATGTGGTAGGATCTGGAGGATTTGGTACCGTATATCGAATGGTGATGAATGATTGTGGTACATTTGCTGTTAAGAGGATTGACAGAAGCCGTGAAGGTTCTGATCAGGTTTTTGAGAGGGAACTAGAGATATTGGGTAGCATCAAGCACATAAATCTAGTTAACCTTCGTGGTTACTGCAGACTTCCTTCTACCAAGCTTCTAATCTACGATTATTTGGCCATGGGAAGCTTAGATGATCTCTTGCATGAAAACACTGAACAATCACTGAAATGGAGTACTCGCCTTAAGATTGCTCTTGGTTCTGCCCGGGGTTTGGCTTACTTGCACCACGACTGCTGCCCGAAAATTGTGCACCGCGACATAAAATCCAGCAACATCCTTCTTGATGAGAACATGGAGCCTCGTGTCTCTGATTTTGGTCTTGCAAAGCTTTTGGTTGATGAAGATGCCCATGTTACCACAGTGGTTGCTGGCACCTTTGGTTATCTTGCACCAGAGTATCTACAAAGTGGAAGAGCTACTGAGAAGTCTGATGTGTATAGTTTTGGAGTTCTGTTGCTAGAACTTGTAACTGGAAAGAGACCAACAGATCCTTCATTTGCAAGGAGAGGTGTAAACGTTGTTGGTTGGATGAACACGTTCCTGAAAGAAAATGGATTGGAGGACGTACTAGACAAAAGATGTAGTGATGCAGATGTAGAATCTGTGGAGGTAATTCTTGAACTAGCAGCAAGTTGCACCGATGCAAATGCGGATGAACGTCCATCCATGAACCAAGTGTTACAGATACTGGAACAAGAGGTTATGTCTCCTTGCCCAAGTGATTTTTATGAGTCACACTCAGATCACTGA 1662 0.4248 MSLIVHGLVSLVILGNNEFAQCINLPYMQLGGIISPSIGKLSRLHRLALHQNGLHGVIPNEIGNCTELRALYLRANYLQGGIPSDIGNLSYLHVLDLSSNSLKGAIPSSIGRLTQLRVLNLSTNFFSGEIPDIGVLSTFRNNAFIGNLDLCGRQVQKPCRTSLGFPVVLPHAESDEAAVPAKRSPHYVKWLLVGAITIMGLALVITLSLLWICLLSKKERAARKYIEVKDQVNPESSRKDDGTKLITFHGDLPYTSCELIEKLESLDEDDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDQVFERELEILGSIKHINLVNLRGYCRLPSTKLLIYDYLAMGSLDDLLHENTEQSLKWSTRLKIALGSARGLAYLHHDCCPKIVHRDIKSSNILLDENMEPRVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFARRGVNVVGWMNTFLKENGLEDVLDKRCSDADVESVEVILELAASCTDANADERPSMNQVLQILEQEVMSPCPSDFYESHSDH 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01113 553 SUPERFAMILY L domain-like 14 148 - -
Viun9g01113 553 SUPERFAMILY Protein kinase-like (PK-like) 244 535 IPR011009 -
Viun9g01113 553 Pfam Protein kinase domain 269 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g01113 553 Gene3D Phosphorylase Kinase; domain 1 230 341 - -
Viun9g01113 553 Gene3D Ribonuclease Inhibitor 10 161 IPR032675 -
Viun9g01113 553 SMART serkin_6 266 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g01113 553 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 23 535 - -
Viun9g01113 553 ProSiteProfiles Protein kinase domain profile. 266 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g01113 553 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 35 159 - -
Viun9g01113 553 Gene3D Transferase(Phosphotransferase) domain 1 342 543 - -
Viun9g01113 553 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 342 545 - -
Viun9g01113 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 386 398 IPR008271 GO:0004672|GO:0006468
Viun9g01113 553 ProSitePatterns Protein kinases ATP-binding region signature. 272 294 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01113 Viun-Chr9 9159846 9163987 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01113 23 543 Receptor kinase-like Gene Family AT2G35620 51.440 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Viun9g01113 Pkinase 5.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01113 - - gmx:100805042 1021.15