Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01111 ATGGAAATGGCTCGTTTATTGTTGATGCTGTTGGTTTTTTCCACCATTGATTTATACCCTTCTTCTCTCGCTCTCACGCAAGACGGACACACATTGTTGGAGATCAAAAGCACTTTGAATGACACAAGGAATGTTCTGAGCAACTGGATAAAGTCTGATGAGTCTCATTGTTCATGGACTGGTATCACTTGTCATCCTGGGGAACAACGAGTTCGCTCAATAAATCTACCTTATATGCAACTGGGAGGTATTATATCTCCCAGCATTGGCAAACTCAGCAGACTGCATAGACTGGCCCTTCATCAGAATGGCTTACATGGAGTTATCCCTAATGAAATTGGCAATTGTACAGAGCTTAGAGCACTGTACTTGAGAGCTAACTATTTACAAGGAGGCATTCCATCAGATATTGGAAATCTTTCTTATTTACATGTATTGGATTTATCAAGTAACTCATTGAAGGGTGCTATACCATCTTCTATTGGTCGTCTTACACAATTGCGTGTTCTGAACTTGTCAACCAATTTCTTTTCCGGTGAAATCCCTGACATTGGAGTACTAAGCACCTTCAGGAACAATGCGTTTATTGGGAACTTAGATCTTTGTGGGCGGCAAGTTCAGAAACCATGTCGGACATCACTTGGTTTCCCAGTGGTGCTACCACATGCAGAAAGTGATGAAGCTGCAGTTCCTGCTAAAAGATCTCCACATTACGTGAAGTGGCTGTTAGTTGGTGCAATAACAATAATGGGGCTTGCACTTGTTATAACTCTTTCGTTACTATGGATTTGCCTGCTGTCAAAGAAGGAAAGAGCTGCTAGAAAATACATAGAAGTTAAGGATCAAGTCAACCCAGAATCAAGTACAAAACTTATCACCTTCCATGGTGATCTGCCATACACATCATGTGAGCTCATAGAAAAGTTGGAGTCTCTCGACGAAGATGATGTGGTAGGATCTGGAGGATTTGGTACCGTATATCGAATGGTGATGAATGATTGTGGTACATTTGCTGTTAAGAGGATTGACAGAAGCCGTGAAGGTTCTGATCAGGTTTTTGAGAGGGAACTAGAGATATTGGGTAGCATCAAGCACATAAATCTAGTTAACCTTCGTGGTTACTGCAGACTTCCTTCTACCAAGCTTCTAATCTACGATTATTTGGCCATGGGAAGCTTAGATGATCTCTTGCATGAAAACACTGAACAATCACTGAAATGGAGTACTCGCCTTAAGATTGCTCTTGGTTCTGCCCGGGGTTTGGCTTACTTGCACCACGACTGCTGCCCGAAAATTGTGCACCGCGACATAAAATCCAGCAACATCCTTCTTGATGAGAACATGGAGCCTCGTGTCTCTGATTTTGGTCTTGCAAAGCTTTTGGTTGATGAAGATGCCCATGTTACCACAGTGGTTGCTGGCACCTTTGGTTATCTTGCACCAGAGTATCTACAAAGTGGAAGAGCTACTGAGAAGTCTGATGTGTATAGTTTTGGAGTTCTGTTGCTAGAACTTGTAACTGGAAAGAGACCAACAGATCCTTCATTTGCAAGGAGAGGTGTAAACGTTGTTGGTTGGATGAACACGTTCCTGAAAGAAAATGGATTGGAGGACGTACTAGACAAAAGATGTAGTGATGCAGATGTAGAATCTGTGGAGGTAATTCTTGAACTAGCAGCAAGTTGCACCGATGCAAATGCGGATGAACGTCCATCCATGAACCAAGTGTTACAGATACTGGAACAAGAGGTTATGTCTCCTTGCCCAAGTGATTTTTATGAGTCACACTCAGATCACTGA 1800 0.4239 MEMARLLLMLLVFSTIDLYPSSLALTQDGHTLLEIKSTLNDTRNVLSNWIKSDESHCSWTGITCHPGEQRVRSINLPYMQLGGIISPSIGKLSRLHRLALHQNGLHGVIPNEIGNCTELRALYLRANYLQGGIPSDIGNLSYLHVLDLSSNSLKGAIPSSIGRLTQLRVLNLSTNFFSGEIPDIGVLSTFRNNAFIGNLDLCGRQVQKPCRTSLGFPVVLPHAESDEAAVPAKRSPHYVKWLLVGAITIMGLALVITLSLLWICLLSKKERAARKYIEVKDQVNPESSTKLITFHGDLPYTSCELIEKLESLDEDDVVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDQVFERELEILGSIKHINLVNLRGYCRLPSTKLLIYDYLAMGSLDDLLHENTEQSLKWSTRLKIALGSARGLAYLHHDCCPKIVHRDIKSSNILLDENMEPRVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFARRGVNVVGWMNTFLKENGLEDVLDKRCSDADVESVEVILELAASCTDANADERPSMNQVLQILEQEVMSPCPSDFYESHSDH 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01111 599 Gene3D Ribonuclease Inhibitor 25 212 IPR032675 -
Viun9g01111 599 SUPERFAMILY Protein kinase-like (PK-like) 292 581 IPR011009 -
Viun9g01111 599 SMART serkin_6 312 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g01111 599 SUPERFAMILY L domain-like 25 204 - -
Viun9g01111 599 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Viun9g01111 599 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 73 581 - -
Viun9g01111 599 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 388 591 - -
Viun9g01111 599 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 187 - -
Viun9g01111 599 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Viun9g01111 599 Pfam Protein kinase domain 315 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g01111 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Viun9g01111 599 Gene3D Transferase(Phosphotransferase) domain 1 388 589 - -
Viun9g01111 599 Gene3D Phosphorylase Kinase; domain 1 275 387 - -
Viun9g01111 599 ProSiteProfiles Protein kinase domain profile. 312 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01111 Viun-Chr9 9159846 9163987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01111 24 589 Receptor kinase-like Gene Family AT2G35620 49.735 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Viun9g01111 Pkinase 6.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01111 - - gmx:100783363 1113.98